genome.fa.s13049.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013049.1 Corchorus capsularis cultivar CVL-1 contig13070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23359

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9536--9562	12	2.2	12	100	0	54	37	7	0	55	1.28
10687--11113	32	13.0	32	75	12	316	16	23	5	55	1.62
10759--10909	16	9.4	17	66	13	86	16	22	6	54	1.65
10770--11118	96	3.6	95	78	12	365	16	21	5	56	1.60
10870--10957	16	5.6	15	73	15	70	17	22	3	56	1.55
10893--11158	72	3.5	71	71	18	217	17	21	4	56	1.59
10971--11104	30	4.4	30	78	14	107	16	22	5	55	1.63
10803--11156	161	2.2	166	83	6	445	17	22	4	55	1.60
11089--11198	40	2.8	40	88	0	166	21	22	2	52	1.59
11194--11253	22	2.7	22	89	5	86	15	23	6	55	1.64
11087--11372	138	2.1	139	84	5	373	20	21	3	54	1.60
11324--11370	16	2.9	16	81	9	60	21	19	2	57	1.51
11321--11375	22	2.5	21	77	13	58	18	20	1	60	1.46
11410--11519	55	2.0	56	85	1	150	22	18	8	50	1.72
13964--14217	22	11.9	22	75	14	141	21	21	4	51	1.65
13904--14250	44	7.9	44	72	14	132	20	22	4	53	1.62
13951--14562	66	9.4	66	71	17	173	21	22	4	51	1.66
14044--14133	40	2.2	41	80	9	103	22	22	7	47	1.76
13976--14367	148	2.7	148	79	10	409	21	21	4	52	1.65
14267--14848	22	27.1	22	71	12	261	20	22	4	51	1.66
13978--14730	352	2.1	356	94	4	1309	20	22	4	52	1.66
14476--14844	126	2.9	127	77	14	348	20	23	4	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14648--14832	42	4.4	43	69	13	134	21	22	4	51	1.66
14713--14768	20	2.8	19	82	15	60	19	19	7	53	1.68
16464--16490	12	2.2	12	100	0	54	7	0	14	77	0.97
22099--22258	31	5.5	31	75	14	133	17	22	26	33	1.96
22147--22248	53	1.9	53	89	0	159	16	19	27	36	1.93

Tables:   1

The End!