genome.fa.s13051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013051.1 Corchorus capsularis cultivar CVL-1 contig13072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13204

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4745--4769	13	1.9	13	100	0	50	56	0	0	44	0.99
8605--8673	36	1.9	36	84	0	93	27	18	11	42	1.85
8655--8720	32	2.1	32	88	5	100	30	24	10	34	1.89
8714--8890	37	4.8	37	88	4	250	23	26	8	41	1.82
8917--9012	15	5.2	21	64	26	65	25	11	13	50	1.75
8916--9014	36	2.8	36	98	1	191	25	11	13	50	1.74
8916--9293	82	4.9	72	83	10	191	22	18	11	47	1.80
9021--9320	41	7.4	41	90	3	466	21	21	11	46	1.81
9021--9316	121	2.4	122	91	3	472	21	20	11	46	1.81
9021--9320	162	1.8	163	91	2	496	21	21	11	46	1.81
9322--9395	37	2.0	36	89	2	112	27	20	6	45	1.76
11454--11745	50	5.8	50	77	9	267	41	5	15	37	1.70
11451--11696	102	2.5	101	92	2	408	42	4	15	37	1.68
12248--12570	38	8.6	38	77	14	248	48	7	18	25	1.73
12257--12401	70	2.1	70	96	0	263	50	6	16	26	1.70
12439--12577	40	3.5	42	84	10	175	47	7	20	24	1.75
12568--12602	16	2.1	17	89	5	54	60	2	20	17	1.49
12590--12990	43	9.4	43	75	13	339	53	6	20	18	1.68
12590--12990	22	18.9	22	72	12	284	53	6	20	18	1.68
12628--12910	102	2.7	101	84	10	340	53	7	20	18	1.69
12851--12975	65	1.9	64	85	1	169	53	7	20	19	1.68
12929--13019	22	4.1	21	76	8	56	57	3	18	20	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12949--13019	29	2.4	29	86	9	92	57	2	19	19	1.53

Tables:   1

The End!