genome.fa.s13053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013053.1 Corchorus capsularis cultivar CVL-1 contig13074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30949

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--361	22	16.9	21	68	19	147	54	5	20	20	1.65
42--406	64	5.6	64	70	18	195	54	6	19	20	1.65
3--361	43	8.4	43	74	16	284	54	5	20	20	1.65
5--281	102	2.6	101	84	8	333	53	6	20	19	1.66
222--302	21	3.8	21	80	3	99	54	8	18	18	1.68
349--397	22	2.2	22	85	7	64	57	6	14	22	1.59
1276--1313	4	9.2	4	94	5	67	73	0	0	26	0.83
1274--1321	25	1.9	25	91	8	80	72	0	0	27	0.84
1276--1321	16	2.8	17	93	6	78	73	0	0	26	0.83
1894--1941	14	3.4	13	83	11	51	29	16	8	45	1.76
1901--1938	15	2.5	15	84	12	51	28	15	5	50	1.66
1988--2345	37	9.6	37	88	3	470	26	17	7	48	1.73
1990--2345	184	1.9	186	87	4	531	26	17	7	48	1.74
2335--2422	41	2.1	41	85	4	124	27	18	10	44	1.82
2386--2454	36	1.9	36	87	0	102	21	17	11	49	1.78
3633--3780	38	4.0	38	93	2	239	25	24	11	38	1.89
3633--3780	75	2.0	74	91	1	242	25	24	11	38	1.89
3624--3780	37	4.3	37	90	4	237	26	23	11	38	1.89
3769--4026	37	7.0	37	89	4	326	23	30	8	37	1.84
4071--4198	35	3.7	35	84	6	163	28	14	12	45	1.81
4205--4369	41	4.1	41	82	12	209	21	19	11	47	1.81
4219--4369	77	2.0	76	84	3	196	20	19	11	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4383--4922	37	14.6	37	93	0	848	26	17	12	43	1.84
4902--4940	18	2.2	18	85	0	51	33	17	7	41	1.79
4998--5171	41	4.2	41	86	0	222	25	21	10	42	1.84
7010--7070	29	2.1	29	96	0	113	16	32	16	34	1.91
8370--8423	25	2.2	25	89	0	81	42	9	18	29	1.81
8820--8978	22	7.2	22	81	0	165	25	25	22	25	2.00
10747--10783	11	3.2	12	85	11	51	70	5	13	10	1.32
14600--14668	35	2.0	35	94	0	120	34	21	11	31	1.89
15320--15361	20	2.1	20	95	0	75	52	21	0	26	1.47
17892--17986	40	2.4	40	98	0	181	31	16	21	30	1.95
18452--18632	48	3.8	48	82	1	211	32	11	29	25	1.91
22764--22793	13	2.3	13	94	0	51	33	13	36	16	1.88
24478--24515	11	3.5	11	85	10	51	57	2	0	39	1.12

Tables:   1

The End!