Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013058.1 Corchorus capsularis cultivar CVL-1 contig13079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20883

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175--253
29
2.6
31
82
11
92
22
24
20
32
1.97
2326--2400
30
2.5
30
80
6
80
26
16
28
29
1.96
2428--2459
15
2.1
16
94
5
57
46
0
0
53
1.00
3053--3095
21
2.1
21
86
4
61
20
20
20
37
1.95
6995--7019
10
2.5
10
100
0
50
24
8
20
48
1.76
9196--9242
21
2.2
22
78
17
55
10
23
48
17
1.77
12084--12110
13
2.1
13
100
0
54
62
7
7
22
1.46
13026--13050
10
2.5
10
100
0
50
24
8
20
48
1.76
14342--14374
12
2.8
12
100
0
66
27
9
33
30
1.88
15753--17619
936
2.0
927
86
6
2574
34
16
18
30
1.93
19252--19321
27
2.6
27
81
4
79
20
17
28
34
1.95
19599--19635
17
2.2
17
95
0
65
27
10
10
51
1.70

Tables:   1

The End!