Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013059.1 Corchorus capsularis cultivar CVL-1 contig13080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23851

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148--189
14
3.2
13
80
13
50
78
2
16
2
0.96
294--342
21
2.3
22
83
13
59
40
12
14
32
1.83
5229--5377
75
2.0
75
81
0
172
39
8
20
31
1.83
5803--5929
44
2.9
44
90
1
200
33
7
20
38
1.80
5806--5948
45
3.2
43
83
8
146
34
8
18
38
1.81
7129--7181
15
3.6
16
78
14
60
73
0
24
1
0.93
7448--7554
50
2.1
50
87
3
153
34
17
14
33
1.90
8076--8438
139
2.6
139
91
0
566
24
28
20
26
1.99
8076--8438
70
5.2
70
79
7
389
24
28
20
26
1.99
8552--8876
47
6.9
47
93
0
551
20
24
19
35
1.96
9182--9251
27
2.6
27
79
4
70
20
17
27
35
1.94
12152--12210
29
2.0
29
100
0
118
23
6
23
45
1.76
12248--12286
20
2.0
20
89
0
60
33
2
10
53
1.48
13466--13514
21
2.3
22
83
13
59
40
12
14
32
1.83
23768--23840
38
1.9
39
86
5
105
43
5
2
47
1.40

Tables:   1

The End!