Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013062.1 Corchorus capsularis cultivar CVL-1 contig13083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18501

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
211--419
22
9.8
22
64
15
71
34
14
9
41
1.78
456--510
22
2.5
22
82
8
69
38
12
7
41
1.71
1030--1114
22
3.9
22
81
3
100
38
15
9
36
1.80
1242--1348
31
3.4
31
87
6
162
5
14
38
41
1.70
1242--1348
16
6.8
16
89
7
166
5
14
38
41
1.70
1242--1348
47
2.3
47
93
3
180
5
14
38
41
1.70
1336--1373
6
6.5
6
87
6
60
0
21
47
31
1.51
1338--1371
17
1.9
18
94
5
61
0
20
52
26
1.46
2141--2183
16
2.7
16
96
0
77
6
13
41
37
1.72
2718--2786
31
2.2
32
82
10
88
52
5
10
31
1.59
2726--2791
31
2.1
32
88
5
100
53
4
13
28
1.60
6198--6757
22
25.6
22
69
10
226
34
15
10
39
1.81
6462--7258
44
18.4
43
69
15
285
35
16
9
39
1.80
6706--6757
20
2.6
20
90
0
86
26
17
13
42
1.86
6863--7029
22
7.6
22
79
6
153
37
12
8
41
1.73
6839--6968
66
2.0
66
83
6
165
34
12
8
44
1.72
6863--7081
22
9.9
23
77
11
138
35
13
8
42
1.75
6975--7092
21
5.4
21
72
16
80
35
13
8
42
1.75
7133--7254
22
5.5
22
72
11
79
38
18
8
35
1.80
7342--7440
45
2.2
45
82
5
121
35
15
13
36
1.86
7290--7474
22
8.3
22
70
13
92
39
17
9
34
1.81
7640--7677
19
2.0
20
85
15
53
60
2
7
28
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7731--7966
121
2.0
118
85
4
321
44
7
12
36
1.71
11018--11122
54
1.9
54
92
0
174
41
5
13
39
1.68
13010--13621
204
3.0
204
97
0
1163
33
16
26
23
1.96
16950--16985
18
2.1
17
94
5
63
63
8
16
11
1.49

Tables:   1

The End!