genome.fa.s13066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013066.1 Corchorus capsularis cultivar CVL-1 contig13087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122420

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7570--7660	45	2.0	45	97	0	173	18	18	17	45	1.86
9879--9939	30	2.0	30	87	6	88	34	14	8	42	1.76
10163--10500	113	3.0	112	94	0	586	26	4	21	47	1.70
15741--15791	20	2.5	19	84	9	57	33	23	11	31	1.91
16864--16917	26	2.1	26	100	0	108	27	14	14	42	1.85
19961--19998	20	2.0	20	89	5	60	63	7	5	23	1.42
19944--19998	22	2.6	21	82	5	58	61	9	7	21	1.50
26500--26534	18	1.9	18	88	0	52	28	25	5	40	1.78
27907--28232	159	2.0	159	96	0	598	32	16	10	40	1.82
30415--30439	13	1.9	13	100	0	50	44	0	0	56	0.99
32594--32636	23	1.9	23	90	4	70	18	11	16	53	1.72
40155--40188	17	2.0	17	100	0	68	35	17	5	41	1.74
44500--44808	152	2.0	152	100	0	618	35	20	13	31	1.91
48330--48372	21	2.0	21	90	0	68	27	32	13	25	1.94
59266--59326	30	2.0	30	96	0	113	24	0	31	44	1.54
61321--61360	21	1.9	21	85	10	55	45	12	5	37	1.64
61475--61507	16	2.1	16	88	11	50	24	3	12	60	1.46
61719--61743	13	1.9	13	100	0	50	52	8	8	32	1.60
67221--67254	14	2.5	14	90	4	52	85	0	14	0	0.60
67221--67256	17	2.1	18	89	5	56	83	0	16	0	0.65
70966--71459	259	1.9	257	94	1	873	26	16	23	34	1.96
72066--72114	19	2.5	20	90	6	73	6	8	14	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80531--80556	3	8.7	3	100	0	52	34	0	0	65	0.93
80699--80795	40	2.5	38	83	3	122	44	16	10	28	1.80
80771--80814	23	1.9	23	90	0	70	43	20	11	25	1.85
81123--81442	103	3.1	103	96	0	586	39	18	11	30	1.87
81881--81922	22	1.9	22	85	0	57	42	21	16	19	1.89
82415--82473	31	1.9	31	89	0	91	49	5	15	30	1.66
84133--84220	43	2.1	41	91	4	140	22	22	21	32	1.98
95683--95757	29	2.6	29	95	0	132	42	20	21	16	1.89
103309--103355	19	2.4	19	86	10	60	23	4	0	72	1.02
103283--103352	31	2.3	29	85	7	86	25	4	0	70	1.06
107191--107421	49	4.7	49	89	1	275	25	32	13	27	1.94
107191--107507	98	3.2	98	81	5	295	26	31	13	27	1.94
107191--107507	147	2.2	146	81	4	343	26	31	13	27	1.94
107406--107498	48	1.9	48	82	6	116	26	27	12	32	1.93
107191--107556	49	7.5	49	80	5	235	26	30	14	28	1.95
107477--107592	49	2.4	49	81	4	137	22	27	14	35	1.93
107477--107607	48	2.7	49	78	1	138	23	27	16	32	1.96
108701--108747	19	2.4	19	86	10	60	23	6	0	70	1.10
112134--112184	25	2.1	25	85	3	68	39	7	1	50	1.42
114450--114478	9	3.2	9	100	0	58	58	20	10	10	1.60
122365--122420	22	2.5	22	88	5	78	8	37	41	12	1.74

Tables:   1

The End!