genome.fa.s13068.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013068.1 Corchorus capsularis cultivar CVL-1 contig13089, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176052

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36997--37051	12	4.5	12	90	4	92	36	16	21	25	1.94
36997--37051	25	2.2	24	96	3	101	36	16	21	25	1.94
38094--38143	3	16.7	3	100	0	100	34	34	0	32	1.58
38483--38508	10	2.6	10	100	0	52	30	7	23	38	1.83
38524--38569	20	2.3	19	78	10	56	34	17	23	23	1.96
44112--44149	18	2.1	18	100	0	76	34	36	0	28	1.58
45660--45725	31	2.1	32	88	5	100	30	18	4	46	1.68
45678--45737	31	2.0	29	84	12	77	35	15	3	46	1.62
45908--45945	19	2.0	20	85	15	53	28	5	2	63	1.30
46111--47223	22	49.9	22	66	18	214	38	9	15	36	1.81
46466--46563	21	4.4	23	77	16	75	43	9	13	33	1.75
46788--46829	20	2.1	20	95	0	75	42	9	16	30	1.80
46791--47276	44	11.2	44	68	13	224	39	9	15	36	1.80
46985--47064	23	3.5	22	81	8	90	38	7	12	41	1.71
47249--47290	22	1.9	22	85	9	59	54	4	11	28	1.57
47809--47871	22	2.9	22	83	7	83	50	0	3	46	1.17
47840--47878	15	2.6	15	88	8	53	58	0	2	38	1.12
47838--47870	10	3.5	10	88	12	52	60	0	0	39	0.97
47816--47870	28	2.0	28	82	13	69	54	0	1	43	1.10
50156--50196	18	2.2	19	86	4	57	34	14	0	51	1.43
50560--50604	20	2.2	20	85	14	58	28	4	6	60	1.42
51749--52092	135	2.5	135	84	0	411	35	17	18	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53709--53782	29	2.5	31	80	13	91	36	21	10	31	1.88
55225--55258	16	2.1	16	100	0	68	47	17	23	11	1.81
57489--57628	66	2.1	65	92	1	226	50	17	18	14	1.79
58372--58405	16	2.1	16	100	0	68	47	17	23	11	1.81
62925--62969	13	3.5	13	84	3	65	55	6	13	24	1.62
62925--62977	25	2.1	25	82	6	63	56	7	13	22	1.62
66838--66869	12	2.6	12	95	5	55	15	0	6	78	0.95
66837--66869	13	2.5	13	85	14	50	15	0	6	78	0.93
70279--70352	27	2.8	27	87	2	105	47	24	12	16	1.80
74361--74386	6	4.3	6	100	0	52	80	0	0	19	0.71
77969--77994	5	5.2	5	100	0	52	80	0	0	19	0.71
82990--83041	24	2.2	24	100	0	104	42	7	0	50	1.31
96356--96412	30	1.9	30	82	13	73	24	28	17	29	1.97
108833--108868	19	1.9	18	88	5	54	41	0	22	36	1.54
114082--114289	87	2.4	84	78	9	206	36	26	8	29	1.85
115714--115955	125	1.9	125	98	0	466	30	10	16	41	1.82
115905--116004	49	2.0	49	96	0	182	30	20	16	34	1.94
116859--116947	32	2.8	32	87	0	133	31	33	22	12	1.91
116867--116993	16	7.9	16	70	10	89	34	34	18	11	1.88
116867--116975	32	3.4	32	84	5	132	32	34	20	12	1.90
116872--116995	48	2.6	47	80	13	137	35	33	19	12	1.89
118210--118237	12	2.3	12	100	0	56	50	32	17	0	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124161--124189	2	14.5	2	100	0	58	51	0	0	48	1.00
128643--128717	35	2.1	35	97	0	141	33	41	4	21	1.72
129884--129948	33	2.0	33	85	11	89	52	7	13	26	1.67
134331--134431	53	1.9	53	87	0	148	16	19	26	36	1.93
135792--135824	16	2.1	16	100	0	66	45	6	30	18	1.73
153111--153240	67	1.9	67	87	3	190	43	16	11	27	1.83
157763--158021	125	2.1	124	79	4	263	46	17	10	25	1.79
158066--158146	41	1.9	42	85	12	112	45	19	14	19	1.85
160948--160985	11	3.5	11	85	10	51	57	2	0	39	1.12
162966--163005	21	2.0	20	85	9	55	30	7	2	60	1.38
163795--163819	12	2.1	12	100	0	50	0	8	0	92	0.40

Tables:   1

The End!