Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013069.1 Corchorus capsularis cultivar CVL-1 contig13090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20537

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
302--516
58
3.7
58
88
3
308
26
33
20
18
1.96
302--549
116
2.1
116
87
0
361
28
32
20
18
1.96
302--549
58
4.3
58
83
6
279
28
32
20
18
1.96
572--694
28
4.7
28
70
15
127
40
26
15
17
1.89
601--638
20
1.9
20
88
0
58
36
36
15
10
1.82
573--738
76
2.2
76
92
0
269
42
26
15
16
1.87
1284--1642
29
12.3
29
77
8
293
31
25
22
19
1.98
1266--1538
148
1.8
150
94
1
487
34
25
22
17
1.96
1784--2010
29
8.0
29
86
4
313
24
30
23
20
1.98
1784--2010
56
4.0
54
85
5
276
24
30
23
20
1.98
1784--2010
83
2.7
83
89
4
339
24
30
23
20
1.98
4218--4247
2
15.0
2
92
0
51
50
3
0
46
1.18
4715--4789
28
2.6
29
89
4
107
41
12
9
37
1.74
7726--7805
40
2.0
40
82
4
99
22
23
21
32
1.98
9110--9200
35
2.6
35
78
3
103
25
29
14
30
1.95
9564--9763
72
2.8
73
88
3
291
22
29
18
30
1.97
10532--10568
19
1.9
19
88
0
56
35
29
13
21
1.92
13059--13153
44
2.1
44
80
7
102
32
32
12
22
1.91
18924--19060
68
2.0
68
94
0
238
29
21
18
29
1.97

Tables:   1

The End!