Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013070.1 Corchorus capsularis cultivar CVL-1 contig13091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51790

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4263--4336
34
2.1
35
85
2
96
35
21
14
28
1.93
5138--5167
2
15.0
2
100
0
60
50
0
0
50
1.00
5382--5441
31
2.0
31
87
6
88
25
15
1
58
1.46
7380--7642
132
2.0
132
98
0
508
34
19
12
32
1.90
8122--8149
3
9.3
3
100
0
56
32
0
67
0
0.91
8096--8263
81
2.0
84
90
6
270
28
10
27
33
1.90
8299--8338
19
2.2
19
90
4
64
12
15
27
45
1.82
9440--9466
2
13.5
2
100
0
54
51
0
0
48
1.00
16180--16209
15
1.9
16
93
6
53
80
6
3
10
1.01
16467--16811
172
2.0
173
93
0
593
46
28
4
19
1.70
17171--17218
21
2.4
21
83
10
66
41
0
6
52
1.27
34527--34573
12
4.0
12
78
15
62
57
4
0
38
1.18
35023--35057
14
2.5
14
85
0
52
71
2
20
5
1.19
35271--35385
57
2.1
54
88
6
169
44
26
6
22
1.78
39968--40085
16
7.4
16
77
5
114
11
18
34
35
1.86
40014--40078
9
7.9
9
70
19
61
12
21
33
32
1.90
40041--40100
7
7.7
7
77
20
57
5
25
40
30
1.77
40010--40100
16
5.7
16
84
2
85
9
21
37
30
1.86
39966--40100
32
4.2
32
79
3
94
10
20
34
34
1.86
39999--40100
48
2.1
48
83
3
125
9
20
36
33
1.86
40288--40413
63
2.0
63
100
0
252
34
9
14
41
1.78
40991--41087
16
6.1
15
76
16
81
8
21
37
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40991--41086
32
3.0
31
85
10
115
8
20
37
33
1.83
40993--41087
48
2.0
48
87
4
138
8
21
37
32
1.83
41030--41096
32
2.1
32
88
5
100
10
22
35
31
1.88
42329--42376
22
2.3
20
86
10
62
39
25
16
18
1.91
42296--42398
53
1.9
53
90
0
161
36
26
20
16
1.93
42348--42446
31
3.2
31
83
0
126
34
26
21
18
1.96
43438--43471
17
1.9
18
88
5
52
47
0
26
26
1.53
44570--44645
35
2.4
30
80
19
107
42
7
10
39
1.69
44580--44650
35
2.0
35
100
0
142
42
8
11
38
1.71
48776--48816
7
5.9
7
100
0
82
26
14
43
14
1.84
50641--51001
183
2.0
176
92
3
596
26
12
14
47
1.79

Tables:   1

The End!