genome.fa.s13077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013077.1 Corchorus capsularis cultivar CVL-1 contig13098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45861

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3182--3252	37	1.9	37	91	0	115	36	8	18	36	1.81
3877--3923	22	2.1	22	84	7	60	38	10	8	42	1.70
4004--4089	45	1.9	45	83	4	111	38	15	11	34	1.83
3960--4496	22	24.9	22	67	15	158	36	15	9	38	1.80
4139--4263	45	2.8	44	77	8	119	36	12	8	41	1.75
4421--4469	19	2.5	20	86	3	73	28	20	10	40	1.85
4550--4654	22	4.8	22	76	5	88	32	12	10	44	1.76
4679--4734	22	2.5	22	88	0	76	41	14	8	35	1.77
4643--4712	36	1.9	36	83	11	90	37	14	10	38	1.79
4842--4952	22	5.1	22	68	15	61	40	18	4	36	1.71
4856--4951	44	2.2	43	80	9	113	42	18	5	33	1.73
5051--5169	22	5.3	22	84	2	130	37	17	9	35	1.82
5070--5176	22	4.9	22	87	0	142	37	17	10	34	1.84
5016--5169	44	3.5	44	79	5	139	39	20	7	32	1.81
5051--5223	66	2.6	65	81	9	188	38	18	9	34	1.83
5116--5221	22	4.8	22	72	15	69	38	16	10	34	1.82
5353--5384	6	5.3	6	100	0	64	15	0	34	50	1.45
5405--5442	19	2.0	20	85	15	53	63	2	5	28	1.30
7277--7445	22	7.7	22	67	13	71	34	14	9	40	1.79
7528--7772	22	11.1	22	72	9	115	35	16	9	38	1.81
7539--7772	44	5.3	43	75	12	190	35	15	9	38	1.80
8071--8125	22	2.5	23	77	11	62	38	12	5	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8252--8428	44	4.0	45	81	9	168	37	18	10	33	1.84
8255--8430	22	7.9	22	74	13	130	38	17	10	34	1.84
8672--8766	38	2.5	38	81	5	102	55	7	16	20	1.64
9906--10057	62	2.5	62	88	0	232	34	12	8	44	1.73
10027--10197	22	7.8	22	71	5	103	34	14	10	40	1.80
10283--10351	22	3.1	22	85	0	93	39	17	10	33	1.83
10368--10411	22	2.0	22	81	0	52	36	22	4	36	1.75
10415--10512	22	4.5	22	72	10	76	35	12	9	42	1.74
10620--10697	22	3.6	22	85	1	104	35	15	7	41	1.76
10594--10720	22	5.8	22	77	5	96	34	13	9	42	1.76
10593--10720	44	2.9	44	73	4	132	34	14	9	42	1.77
10823--10895	37	2.0	37	81	5	85	64	10	12	12	1.50
11017--11076	31	1.9	31	93	0	102	50	3	16	30	1.62
12443--12475	17	1.9	17	93	0	57	36	15	3	45	1.61
12533--12749	108	2.0	108	91	5	350	47	8	10	32	1.69
22377--22435	30	1.9	31	96	3	111	30	18	3	47	1.65
22377--22443	30	2.2	31	91	5	109	31	16	4	47	1.66
22445--22497	19	2.8	19	77	5	54	37	5	0	56	1.23
22534--22610	22	3.5	21	87	5	91	35	14	19	31	1.92
22576--22652	22	3.4	22	77	10	66	37	9	14	38	1.78
22783--23039	22	11.5	22	65	17	82	42	10	14	33	1.79
22855--23070	22	9.7	23	72	13	107	41	11	12	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22922--23033	44	2.5	44	80	4	118	42	10	15	31	1.81
22876--23039	66	2.4	66	78	5	168	42	10	13	34	1.78
23154--23202	19	2.5	20	86	6	73	42	12	20	24	1.86
23190--23749	22	25.7	22	67	13	153	39	9	13	36	1.78
23185--23354	66	2.6	65	77	8	173	41	9	14	34	1.78
23534--23619	45	1.9	45	83	4	111	33	11	16	38	1.85
23581--23756	65	2.7	66	72	12	157	40	10	14	34	1.81
30976--31002	7	3.9	7	100	0	54	29	0	25	44	1.54
35724--35799	37	2.1	37	100	0	152	21	10	28	39	1.86
43515--43540	1	26.0	1	100	0	52	0	0	0	100	0.00

Tables:   1

The End!