Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001308.1 Corchorus capsularis cultivar CVL-1 contig01308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9566
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:1244 original size:28 final size:28

Alignment explanation


    Indices: 1204--1266  Score: 117
    Period size: 28  Copynumber: 2.2  Consensus size: 28

       1194 TACTTTTCTC

                                        
       1204 AATCAAATTTCTTATCGTATCATAAAAG
          1 AATCAAATTTCTTATCGTATCATAAAAG

                                        
       1232 AATCAAATTTCTTATCGTATCATAAAAG
          1 AATCAAATTTCTTATCGTATCATAAAAG

              *    
       1260 AACCAAA
          1 AATCAAA

       1267 CGATTTGCAT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   34  1.00

ACGTcount: A:0.46, C:0.16, G:0.06, T:0.32


Consensus pattern (28 bp):   
AATCAAATTTCTTATCGTATCATAAAAG
Done.