Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013080.1 Corchorus capsularis cultivar CVL-1 contig13101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47349

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--105
21
4.5
22
75
21
80
53
7
18
20
1.68
2997--3057
22
2.8
22
87
5
79
37
14
9
37
1.80
3103--3211
22
4.9
23
74
13
86
34
19
6
39
1.77
3089--3238
44
3.5
41
76
11
131
32
18
8
40
1.81
3776--3877
52
1.9
53
84
5
136
49
4
9
36
1.58
4546--4586
3
13.7
3
94
0
73
31
0
2
65
1.05
4689--4752
30
2.1
30
85
5
85
45
7
12
34
1.71
4786--4812
3
9.0
3
100
0
54
33
0
0
66
0.92
14187--14233
3
15.7
3
95
0
85
31
2
0
65
1.04
25200--25240
20
2.0
20
100
0
82
46
14
19
19
1.84
26088--26116
14
2.0
15
93
6
51
62
17
6
13
1.52
26573--26653
41
2.0
41
80
9
94
62
8
7
20
1.48
35102--35158
2
29.0
2
96
3
107
0
49
0
50
1.00
35158--35184
2
13.5
2
100
0
54
48
0
0
51
1.00
36419--36525
46
2.4
45
84
3
135
38
14
13
34
1.84
36643--36691
20
2.4
21
86
3
64
30
14
8
46
1.73
36259--36738
22
21.8
21
66
14
130
38
15
8
37
1.78
36770--36843
22
3.3
22
71
12
69
36
17
6
39
1.76
36918--36959
22
1.9
22
95
0
75
42
4
7
45
1.52
36943--36995
22
2.4
23
78
9
65
32
20
9
37
1.85
37104--37453
22
15.9
22
70
16
158
35
16
9
38
1.82
37127--37288
87
1.9
87
81
11
197
33
16
11
38
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37247--37381
70
1.9
70
84
4
182
37
15
6
40
1.74
37197--37424
114
2.0
114
80
8
259
34
17
7
40
1.78
37191--37468
65
4.2
65
75
12
208
36
16
7
38
1.78
37352--37496
66
2.2
65
83
3
175
41
17
6
34
1.76
37352--37496
22
6.6
22
78
7
152
41
17
6
34
1.76
38837--38919
40
2.1
40
100
0
166
33
9
9
46
1.69
41513--41540
2
14.0
2
100
0
56
50
0
0
50
1.00
42361--42407
9
5.1
9
80
12
51
53
2
0
44
1.12
42372--42413
20
2.1
20
100
0
84
54
4
0
40
1.21
43710--43888
89
2.0
89
94
2
315
43
33
4
18
1.71
45716--45754
3
13.3
3
84
15
55
30
2
33
33
1.72
46828--46882
12
4.5
12
95
4
101
25
23
16
34
1.95
46828--46882
25
2.2
24
96
3
101
25
23
16
34
1.95

Tables:   1

The End!