Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013081.1 Corchorus capsularis cultivar CVL-1 contig13102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25493

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6274--6867
167
3.6
166
74
10
608
27
15
15
40
1.88
10912--10959
3
16.0
3
100
0
96
33
0
0
66
0.92
11145--11191
21
2.2
21
81
7
60
46
12
8
31
1.72
16395--16451
30
1.9
30
88
0
87
38
10
21
29
1.87
22877--22908
13
2.5
13
95
5
57
40
6
15
37
1.73
23661--23726
28
2.4
28
80
10
73
31
13
28
25
1.94
23665--23780
60
1.9
61
85
1
162
32
12
26
27
1.93
23845--23991
47
3.1
46
88
3
204
34
14
28
22
1.94
24022--24080
15
3.7
15
82
12
82
45
1
22
30
1.62
24110--24242
38
3.5
38
85
0
176
31
18
19
30
1.95
24220--24264
22
2.0
24
86
8
67
37
11
17
33
1.85
24244--24340
38
2.6
37
88
3
133
31
15
18
34
1.92
24144--24608
98
4.7
98
93
0
759
31
15
18
34
1.92
24349--24438
38
2.4
38
92
0
144
30
15
18
35
1.92
24378--24493
60
1.9
62
94
3
209
31
13
18
35
1.91
24416--24460
22
2.0
24
86
8
67
37
11
17
33
1.85
24440--24536
38
2.6
38
91
3
162
30
13
19
36
1.90
24476--24596
60
2.0
62
90
3
192
32
14
19
34
1.91
24514--24558
22
2.0
24
86
8
67
37
11
17
33
1.85

Tables:   1

The End!