genome.fa.s13087.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013087.1 Corchorus capsularis cultivar CVL-1 contig13108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25815

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7197--7223	14	1.9	14	100	0	54	14	7	14	62	1.51
8747--8779	17	1.9	17	93	0	57	72	15	0	12	1.12
11150--11299	61	2.4	61	79	1	183	36	17	22	23	1.94
11330--11447	62	1.9	62	92	0	200	36	17	25	20	1.94
11235--11418	96	1.9	96	87	0	269	37	17	22	22	1.94
11400--11474	27	2.7	28	74	13	75	29	18	29	22	1.98
11451--11524	40	2.0	37	82	15	91	35	13	24	27	1.93
11559--11716	28	5.2	27	66	24	75	37	18	21	22	1.94
11576--11762	34	5.9	34	64	22	109	37	18	22	21	1.94
11495--11839	62	5.6	62	82	4	367	37	15	24	23	1.93
11868--11966	47	2.1	47	84	3	128	36	19	22	22	1.95
11942--12246	48	6.4	48	86	1	391	35	16	27	20	1.95
11942--12246	95	3.2	95	86	2	396	35	16	27	20	1.95
11941--12246	143	2.1	143	86	3	429	35	16	27	20	1.94
14318--14365	14	3.5	13	83	8	60	35	12	8	43	1.73
16936--17058	50	2.5	49	85	2	149	31	18	29	20	1.96
17029--17157	49	2.6	50	88	2	190	31	18	31	18	1.95
18497--18537	18	2.3	18	91	8	66	51	4	34	9	1.56
20916--20971	28	2.0	28	92	0	94	39	14	10	35	1.81
21020--21050	16	1.9	16	93	0	53	58	16	19	6	1.59
21983--22163	91	2.0	91	87	2	265	33	27	9	29	1.88
22955--23007	27	1.9	28	96	3	99	37	0	13	49	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23425--23473	9	5.1	10	82	9	66	24	0	2	73	0.94
23426--23473	19	2.5	19	93	0	78	22	0	2	75	0.91
24726--24757	15	2.2	15	94	5	57	71	18	0	9	1.12

Tables:   1

The End!