genome.fa.s13088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013088.1 Corchorus capsularis cultivar CVL-1 contig13109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64536

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3752--3853	30	3.4	29	77	12	109	17	12	29	40	1.87
3808--3990	53	3.4	53	85	10	237	19	14	27	38	1.91
6150--6198	21	2.3	22	79	6	57	30	22	12	34	1.91
11935--11993	30	2.0	30	90	6	93	22	30	16	30	1.96
12372--12513	33	4.3	33	95	0	248	45	18	10	26	1.81
12372--12546	66	2.7	66	87	1	217	43	18	10	27	1.83
12539--12643	33	3.2	33	80	2	131	45	20	9	24	1.80
14021--14055	10	3.7	9	88	11	52	17	0	0	82	0.66
14128--14161	8	4.1	8	85	7	50	23	2	14	58	1.50
23086--23366	48	5.7	48	77	10	228	30	17	28	23	1.97
23086--23400	48	6.4	48	78	8	226	31	17	27	23	1.97
23136--23466	49	6.6	53	73	9	205	31	17	27	23	1.97
23086--23480	150	2.6	151	79	8	400	32	17	27	23	1.96
23326--23478	53	3.0	52	71	5	123	33	16	26	22	1.96
24804--24838	18	1.9	18	88	0	52	0	14	11	74	1.08
30807--30834	7	4.0	7	100	0	56	71	0	28	0	0.86
30975--31029	24	2.2	25	77	3	58	40	21	23	14	1.90
31124--31254	27	5.1	27	71	19	127	35	29	16	18	1.93
31206--31276	27	2.6	27	86	0	88	43	26	11	18	1.83
31257--31324	27	2.5	27	83	4	75	48	29	10	11	1.73
38769--38850	33	2.5	33	81	0	101	18	23	46	12	1.82
48245--48283	6	6.5	6	100	0	78	30	0	15	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59038--59086	21	2.3	21	85	0	62	10	32	28	28	1.90
61618--61695	33	2.3	34	86	2	104	34	5	19	41	1.73
61896--61953	28	2.0	29	83	9	75	29	10	20	39	1.86
61947--62017	28	2.6	28	90	2	108	40	5	12	40	1.67
62074--62132	28	2.1	28	87	0	82	30	11	22	35	1.90
62093--62171	35	2.3	35	82	6	99	30	7	16	45	1.75
61978--62254	150	1.8	149	86	4	405	33	7	19	39	1.79
62144--62296	44	3.5	44	87	7	192	34	7	20	36	1.82
61994--62444	192	2.3	192	91	2	703	33	7	20	38	1.82
61984--62439	150	3.1	146	80	11	400	33	7	20	38	1.82
62269--62324	28	2.0	28	85	0	76	30	10	23	35	1.89
62285--62363	35	2.3	35	80	2	88	30	6	17	45	1.73
62336--62444	43	2.6	43	85	7	134	33	8	22	36	1.84
62414--62473	28	2.1	28	87	0	84	30	10	23	36	1.87
62459--62522	7	9.1	7	100	0	128	29	0	14	56	1.39
62187--62515	148	2.2	148	89	2	507	31	6	20	40	1.80
62648--63123	37	12.8	38	75	8	392	44	16	16	22	1.86
62650--63085	74	5.9	74	88	3	585	44	16	16	22	1.86
63911--64078	87	1.9	87	90	0	264	26	25	10	37	1.88
64199--64244	23	2.0	23	82	0	56	2	15	2	80	0.91

Tables:   1

The End!