Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013090.1 Corchorus capsularis cultivar CVL-1 contig13111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38103

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--165
42
2.3
42
89
3
153
44
12
19
23
1.84
292--508
37
5.9
37
94
0
362
39
8
29
22
1.83
332--427
19
5.2
19
63
14
65
37
9
32
20
1.85
303--542
111
2.2
109
88
5
326
38
8
29
23
1.84
520--670
36
4.2
36
87
2
196
38
9
22
29
1.85
521--661
73
1.9
72
86
1
201
39
8
22
29
1.84
17394--17439
16
2.9
17
84
15
55
6
0
26
67
1.15
26031--26209
49
3.6
49
90
2
261
52
5
18
22
1.66
26031--26239
98
2.1
100
83
6
266
53
4
19
22
1.63
26250--26350
40
2.5
40
88
3
150
51
11
10
25
1.71
26397--26457
11
5.6
11
84
9
81
55
9
24
9
1.63
26405--26457
20
2.5
21
87
9
81
56
9
24
9
1.60
26446--26523
35
2.2
35
95
0
138
51
7
19
21
1.72
26523--26602
36
2.3
36
82
4
92
46
12
20
21
1.83
28629--28718
37
2.6
34
81
10
103
40
8
21
30
1.83
29942--30082
33
4.3
32
80
7
122
26
8
22
42
1.82
30493--30551
30
2.0
30
86
6
84
32
16
28
22
1.96

Tables:   1

The End!