Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001310.1 Corchorus capsularis cultivar CVL-1 contig01310, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1248
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40


Found at i:1080 original size:41 final size:38

Alignment explanation


    Indices: 1029--1109  Score: 101
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       1019 TTTCAACAAA

                         *                            
       1029 TTCAAAAATCTTATATTGATCTTACTTAATACTTT-ACATTT
          1 TTCAAAAATCTTACA-T--TCTTACTTAATACTTTGA-ATTT

                 *                                
       1070 TTCAACAATCTTACATTCTTACTTAATACTTTGAATTT
          1 TTCAAAAATCTTACATTCTTACTTAATACTTTGAATTT

              
       1108 TT
          1 TT

       1110 GGTAATTTTA


Statistics
Matches: 37,  Mismatches: 2, Indels: 5
        0.84            0.05        0.11

Matches are distributed among these distances:
  38   22  0.59
  39    1  0.03
  40    1  0.03
  41   13  0.35

ACGTcount: A:0.32, C:0.16, G:0.02, T:0.49


Consensus pattern (38 bp):   
TTCAAAAATCTTACATTCTTACTTAATACTTTGAATTT
Done.