Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013100.1 Corchorus capsularis cultivar CVL-1 contig13121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27277

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1306--1393
33
2.7
33
80
0
95
28
12
18
40
1.87
1427--1502
33
2.3
33
100
0
152
23
11
19
44
1.84
1881--1939
30
2.0
30
90
6
93
32
18
28
20
1.96
3477--3512
19
1.9
18
88
5
54
41
2
22
33
1.68
5509--5567
30
2.0
30
90
6
93
22
30
16
30
1.96
5957--6031
33
2.3
33
95
0
132
37
17
9
36
1.82
8651--8707
30
1.9
30
85
7
80
22
26
17
33
1.96
9321--9426
33
3.3
33
88
3
155
46
20
7
25
1.77
12835--12874
21
1.9
21
89
0
62
32
20
15
32
1.93
13025--13058
12
2.8
12
86
0
50
14
35
23
26
1.94
14018--14125
33
3.3
33
81
5
112
9
27
38
24
1.86
15916--15971
27
2.0
28
93
3
96
41
14
10
33
1.80
18656--18689
17
2.0
17
94
0
59
23
5
14
55
1.61
19477--19567
33
2.8
33
94
0
155
6
25
41
26
1.79
19551--19657
33
3.2
33
86
5
128
8
28
39
24
1.84
19710--19826
59
2.0
59
89
3
182
21
29
19
29
1.98
23053--23132
33
2.4
33
91
0
124
23
41
28
6
1.79
24892--24971
33
2.4
33
95
0
142
22
40
30
7
1.81
24892--24998
33
3.2
33
88
5
119
23
39
28
8
1.84
25958--25991
17
2.0
17
94
0
59
55
14
5
23
1.61

Tables:   1

The End!