Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013103.1 Corchorus capsularis cultivar CVL-1 contig13124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5891
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:839 original size:28 final size:28

Alignment explanation


    Indices: 782--839  Score: 71
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        772 CTAATAACTT

                             * * * * *  
        782 AAAGAAAACTATTATTTTTTTGACTGAA
          1 AAAGAAAACTATTATTTATATCAATAAA

                                        
        810 AAAGAAAACTATTATTTATATCAATAAA
          1 AAAGAAAACTATTATTTATATCAATAAA

              
        838 AA
          1 AA

        840 TATAGATATC


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  28   25  1.00

ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34


Consensus pattern (28 bp):   
AAAGAAAACTATTATTTATATCAATAAA

Found at i:1492 original size:17 final size:17

Alignment explanation


    Indices: 1470--1511  Score: 66
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       1460 AACAAACAAC

                             
       1470 TAAATAAAAAAACTAAT
          1 TAAATAAAAAAACTAAT

                    *        
       1487 TAAATAAATAAACTAAT
          1 TAAATAAAAAAACTAAT

               *    
       1504 TAATTAAA
          1 TAAATAAA

       1512 CTCATATCTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  17   23  1.00

ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29


Consensus pattern (17 bp):   
TAAATAAAAAAACTAAT
Done.