Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013109.1 Corchorus capsularis cultivar CVL-1 contig13130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7609
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30


Found at i:2571 original size:13 final size:13

Alignment explanation


    Indices: 2553--2587  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       2543 AATCTAAATC

                   *     
       2553 TAAAGCAGATTAA
          1 TAAAGCAAATTAA

                         
       2566 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                     
       2579 TAAAGCAAA
          1 TAAAGCAAA

       2588 CAATAATTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20


Consensus pattern (13 bp):   
TAAAGCAAATTAA

Found at i:4115 original size:20 final size:22

Alignment explanation


    Indices: 4091--4140  Score: 59
    Period size: 20  Copynumber: 2.4  Consensus size: 22

       4081 CAAAACAGGG

                                  
       4091 TAAAAACACATAAAAATAGC-A
          1 TAAAAACACATAAAAATAGCTA

                 ** *             
       4112 -AAAAGTATATAAAAATAGCTA
          1 TAAAAACACATAAAAATAGCTA

                    
       4133 TAAAAACA
          1 TAAAAACA

       4141 TGCATAATTT


Statistics
Matches: 22,  Mismatches: 5, Indels: 3
        0.73            0.17        0.10

Matches are distributed among these distances:
  20   16  0.73
  21    1  0.05
  22    5  0.23

ACGTcount: A:0.66, C:0.10, G:0.06, T:0.18


Consensus pattern (22 bp):   
TAAAAACACATAAAAATAGCTA
Done.