Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001311.1 Corchorus capsularis cultivar CVL-1 contig01311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1776
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42


Found at i:1114 original size:57 final size:57

Alignment explanation


    Indices: 1045--1155  Score: 197
    Period size: 57  Copynumber: 1.9  Consensus size: 57

       1035 CCATCTACTC

                           *                                          
       1045 TGAGATAAATCATATTGATAATGACCCCTTAACCAGTTTTTCCA-TTCATTCATCCCA
          1 TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTC-TTCATCCCA

                                                                  
       1102 TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTCTTCATC
          1 TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTCTTCATC

       1156 TTCTTCATCC


Statistics
Matches: 52,  Mismatches: 1, Indels: 2
        0.95            0.02        0.04

Matches are distributed among these distances:
  57   49  0.94
  58    3  0.06

ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36


Consensus pattern (57 bp):   
TGAGATAAATCATATCGATAATGACCCCTTAACCAGTTTTTCCATTTCTTCATCCCA
Done.