Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013113.1 Corchorus capsularis cultivar CVL-1 contig13134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59543

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10228--10315
29
2.9
31
72
24
80
27
14
17
40
1.88
11858--11912
28
2.0
28
92
0
92
52
20
14
12
1.73
13887--13942
29
2.0
28
82
10
69
26
3
35
33
1.74
22124--22166
11
3.9
11
90
0
68
46
6
4
41
1.51
22120--22166
22
2.1
22
96
0
85
46
6
4
42
1.48
22981--23007
14
1.9
14
100
0
54
81
0
0
18
0.69
24923--24955
15
2.2
15
100
0
66
66
9
6
18
1.40
25440--25514
37
2.1
37
94
2
134
18
5
6
69
1.30
27319--27360
16
2.6
16
84
0
57
21
2
28
47
1.63
31257--31293
18
2.1
18
100
0
74
35
10
10
43
1.75
36197--36237
21
2.0
21
95
0
73
19
12
4
63
1.46
38020--38110
29
3.1
29
84
10
123
27
9
30
31
1.89
39588--39620
11
3.0
11
91
8
50
42
0
3
54
1.15
48366--48402
6
6.2
6
93
0
56
0
27
51
21
1.48
48365--48400
18
2.0
18
94
0
63
0
25
50
25
1.50
50651--50993
173
2.0
173
99
0
677
44
14
16
25
1.85
55236--55391
30
5.2
30
99
0
294
16
20
27
35
1.94
55602--55626
13
1.9
13
100
0
50
84
16
0
0
0.63

Tables:   1

The End!