Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013115.1 Corchorus capsularis cultivar CVL-1 contig13136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21235

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
135--484
181
2.0
173
88
5
522
30
13
20
36
1.91
308--703
205
1.9
206
88
4
591
31
13
18
36
1.90
1746--1789
3
14.7
3
100
0
88
31
0
0
68
0.90
7171--7652
166
2.9
165
79
4
547
39
16
14
29
1.89
8621--8665
21
2.1
22
91
4
74
40
11
28
20
1.86
8706--8742
2
19.5
2
83
10
51
51
0
0
48
1.00
16691--16737
22
2.1
22
96
0
85
42
4
6
46
1.48
16691--16733
11
3.9
11
90
0
68
41
4
6
46
1.51
16974--17031
27
2.1
27
87
0
80
34
1
31
32
1.68
17346--17459
59
1.9
59
98
0
219
50
17
3
28
1.62
17632--17660
2
14.5
2
100
0
58
51
0
0
48
1.00
18926--18958
17
1.9
17
93
0
57
60
27
0
12
1.32
21180--21229
2
25.0
2
100
0
100
50
0
0
50
1.00

Tables:   1

The End!