Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013117.1 Corchorus capsularis cultivar CVL-1 contig13138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19630

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2882--2930
3
16.3
3
95
0
89
34
2
0
63
1.06
5417--5517
29
3.4
29
77
12
98
15
12
29
41
1.85
10754--10791
19
2.0
19
89
0
58
39
15
21
23
1.92
11962--12000
11
3.2
12
89
7
53
51
2
2
43
1.29
12854--12879
11
2.4
11
100
0
52
46
0
7
46
1.31
13223--13279
15
3.6
15
75
17
53
42
33
15
8
1.78
16012--16038
1
27.0
1
100
0
54
0
0
0
100
0.00
16282--16316
17
2.1
17
100
0
70
37
28
5
28
1.80
16281--16321
17
2.6
16
88
11
66
31
26
7
34
1.84
16506--16622
39
3.0
39
100
0
234
38
17
7
35
1.79
16594--16775
91
2.0
91
96
0
337
31
20
6
41
1.78
17087--17155
34
2.0
34
100
0
138
42
5
20
31
1.76
18443--18499
28
2.0
28
100
0
114
24
17
17
40
1.91
19195--19276
29
2.7
30
79
5
103
39
13
21
25
1.90
19325--19365
2
20.5
2
100
0
82
48
0
0
51
1.00
19526--19606
37
2.2
37
91
2
128
44
9
7
38
1.66

Tables:   1

The End!