Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013119.1 Corchorus capsularis cultivar CVL-1 contig13140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92337

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1813--1850
14
2.5
15
87
8
51
47
42
5
5
1.48
6300--6408
54
2.0
54
100
0
218
27
16
28
27
1.97
6945--7002
22
2.6
22
97
2
107
12
41
29
17
1.85
7045--7078
14
2.4
14
85
0
50
29
8
5
55
1.54
16182--16208
5
5.4
5
100
0
54
37
0
0
62
0.95
27631--27679
25
2.0
25
88
4
73
36
0
30
32
1.58
27715--27757
20
2.1
21
86
4
61
30
6
41
20
1.79
28913--28959
2
24.0
2
82
4
60
53
0
0
46
1.00
28908--28950
14
3.1
14
86
6
52
55
0
0
44
0.99
28969--29052
42
2.0
42
97
0
159
40
10
9
39
1.73
30863--30928
2
33.5
2
96
3
125
51
0
48
0
1.00
31535--31568
11
3.2
11
91
4
52
26
0
0
73
0.83
31534--31568
15
2.4
14
95
4
61
25
0
0
74
0.82
42194--42236
16
2.8
15
82
6
50
23
6
0
69
1.12
44184--44266
42
2.0
43
88
7
125
24
16
22
36
1.95
44442--44473
2
17.0
2
87
12
50
50
0
0
50
1.00
45817--45910
28
3.2
28
68
19
84
22
23
20
34
1.97
45804--45919
59
2.0
59
96
0
214
22
22
19
35
1.96
54839--54880
15
2.8
15
92
0
75
7
28
19
45
1.76
67783--67814
6
5.5
6
96
3
57
31
0
12
56
1.37
71643--71691
21
2.3
21
78
0
53
65
10
8
16
1.46
79173--79207
12
2.9
12
100
0
70
42
17
22
17
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86526--86622
32
3.0
31
80
14
108
30
24
20
23
1.98
87048--87414
188
2.0
188
93
0
626
18
29
26
26
1.98
87708--87743
6
6.2
6
87
6
56
0
36
0
63
0.94
87708--87743
17
2.1
17
94
0
63
0
36
0
63
0.94
87755--87839
25
3.5
23
69
23
66
9
45
9
35
1.69
87859--87894
6
6.2
6
87
6
56
0
36
0
63
0.94
87597--87905
151
2.0
151
97
0
582
10
38
9
41
1.72
87859--87894
17
2.1
17
94
0
63
0
36
0
63
0.94
89568--89622
24
2.3
24
96
0
101
32
25
25
16
1.96
89649--89738
27
3.3
27
78
3
101
20
41
18
20
1.91
92250--92337
24
3.7
24
85
0
113
13
36
31
18
1.90

Tables:   1

The End!