Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013121.1 Corchorus capsularis cultivar CVL-1 contig13142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63039

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
921--1093
61
2.9
61
84
6
235
32
15
28
23
1.95
984--1083
28
3.4
28
70
17
85
30
15
30
25
1.95
1159--1255
48
2.0
48
84
9
128
30
16
29
22
1.96
1252--1282
15
2.1
15
93
0
53
41
3
22
32
1.70
1284--1328
17
2.8
16
90
6
65
42
4
24
28
1.74
1358--1620
38
7.0
38
79
9
290
31
20
19
28
1.97
1361--1637
112
2.5
112
90
4
423
31
19
20
29
1.97
1361--1612
74
3.4
73
78
8
249
30
19
20
28
1.97
1588--1739
58
2.5
61
89
4
229
32
17
17
33
1.93
1708--1799
38
2.3
40
92
3
152
26
17
20
35
1.95
3584--3631
14
3.5
14
78
13
55
35
8
10
45
1.68
6494--6966
49
9.7
49
81
3
398
30
14
30
24
1.95
6752--6979
100
2.3
97
82
7
248
32
13
31
22
1.93
7604--7655
26
2.0
26
84
3
68
57
11
7
23
1.59
12874--12907
16
2.2
16
89
5
52
29
2
8
58
1.43
19444--19477
2
17.0
2
100
0
68
50
0
0
50
1.00
20198--20232
16
2.1
17
89
5
54
25
14
5
54
1.62
22810--22969
79
2.0
79
97
0
302
30
21
18
30
1.97
26918--27025
55
1.9
57
90
3
175
33
16
33
16
1.92
31502--31536
17
2.1
17
88
0
52
28
31
8
31
1.87
33008--33340
167
2.0
166
95
1
596
35
18
12
33
1.88
34992--35131
22
6.3
22
76
12
133
32
7
19
40
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35036--35126
46
2.0
46
82
8
114
32
8
18
39
1.82
35167--36039
22
40.0
22
67
15
269
38
9
16
36
1.81
35774--35899
45
2.8
45
79
5
121
39
9
11
38
1.75
43490--43516
11
2.5
11
100
0
54
25
18
0
55
1.43
46304--46353
24
2.1
24
100
0
100
32
20
12
36
1.89
47601--47667
31
2.2
31
84
5
84
49
8
17
23
1.75
47786--47957
31
5.5
31
80
6
159
36
16
11
36
1.85
47786--47899
32
3.5
32
91
3
167
39
16
9
34
1.82
47999--48030
3
10.7
3
100
0
64
65
0
0
34
0.93
48938--49054
31
3.9
30
80
4
110
39
14
15
30
1.87
49000--49078
31
2.5
31
95
0
140
37
10
17
34
1.84
49197--49262
31
2.2
29
89
5
96
21
16
12
50
1.77
49802--49841
14
2.7
14
88
7
53
57
0
10
32
1.32
54548--54572
3
8.3
3
100
0
50
0
32
0
68
0.90
54637--54710
30
2.4
31
86
2
96
29
17
18
33
1.94
54830--54860
15
2.0
16
93
6
55
77
0
9
12
0.99
57511--57554
18
2.4
18
88
3
61
68
4
13
13
1.36
57652--57729
33
2.4
33
91
0
129
11
32
42
14
1.81
57759--57857
33
3.0
33
80
0
108
18
33
27
21
1.96
60145--60172
2
14.0
2
100
0
56
50
0
0
50
1.00
62666--62696
10
3.1
10
100
0
62
32
29
0
38
1.57

Tables:   1

The End!