Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013124.1 Corchorus capsularis cultivar CVL-1 contig13145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89542

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1055--1107
15
3.5
16
85
12
58
75
0
20
3
0.96
3127--3157
2
15.5
2
100
0
62
51
0
0
48
1.00
7563--7820
30
8.6
30
84
5
308
35
17
15
31
1.92
7576--7820
92
2.7
88
84
9
318
35
17
16
31
1.92
16727--16873
41
3.6
41
85
1
206
34
14
14
36
1.87
20376--20568
22
8.7
22
71
6
115
36
16
9
36
1.82
21433--21470
20
1.9
20
100
0
76
42
21
10
26
1.85
21367--21487
22
5.6
22
71
3
84
40
15
10
33
1.82
21429--21487
20
2.8
22
76
10
68
40
15
10
33
1.81
21610--21864
22
11.6
22
69
7
124
35
16
9
38
1.81
21610--21754
66
2.2
66
83
0
173
37
19
6
37
1.77
21785--21881
43
2.2
44
85
8
128
35
14
12
38
1.84
22265--22293
2
14.5
2
100
0
58
51
0
0
48
1.00
22753--22819
33
2.0
33
97
0
125
49
5
16
28
1.69
23977--24034
5
12.4
5
85
14
88
56
0
20
22
1.42
24745--24780
2
18.5
2
94
5
65
50
0
0
50
1.00
26070--26096
5
5.4
5
100
0
54
40
40
18
0
1.51
27156--27211
25
2.2
25
84
15
71
67
0
25
7
1.15
27306--27341
18
2.0
18
94
0
63
27
22
30
19
1.98
35150--35203
27
2.0
27
100
0
108
14
37
14
33
1.88
47681--48416
130
5.7
130
87
2
985
34
15
13
36
1.86
51914--51956
2
21.5
2
90
0
68
46
2
2
48
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53737--54188
133
3.4
132
81
5
366
39
13
9
36
1.78
53853--54225
133
2.8
133
83
3
421
38
14
9
37
1.78
54188--54256
34
2.0
34
86
5
95
40
15
8
34
1.79
59153--59277
29
4.3
29
79
13
125
19
22
0
57
1.45
59167--59252
26
3.2
25
78
18
91
20
20
0
58
1.40
59081--59253
27
6.1
28
72
22
105
21
19
1
56
1.51
59236--59338
27
3.7
27
72
15
84
17
26
1
54
1.53
59263--59333
28
2.6
28
74
14
67
19
25
1
53
1.53
59581--60109
55
9.6
55
87
0
738
23
17
9
49
1.75
59581--60108
276
1.9
275
90
1
842
23
17
9
49
1.76
65514--65652
70
2.0
70
98
0
269
21
20
27
30
1.98
68186--68256
37
1.9
37
94
0
124
36
16
8
38
1.80
70697--70767
37
1.9
37
88
0
106
36
16
8
38
1.80
72959--72994
17
2.1
17
100
0
72
55
33
11
0
1.35
77241--77278
18
2.1
19
90
5
60
23
10
18
47
1.79
81838--81871
16
2.1
16
100
0
68
70
5
11
11
1.32
82197--82232
17
2.1
17
100
0
72
13
5
30
50
1.65
82351--82412
30
2.1
30
96
0
115
27
9
25
37
1.87
82381--82467
45
1.9
45
92
0
147
22
10
26
40
1.86
82301--82459
78
2.1
73
89
8
230
23
10
27
38
1.87
84447--84471
13
1.9
13
100
0
50
48
16
12
24
1.79
84686--84925
119
2.0
121
95
3
432
39
18
10
31
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85075--85099
13
1.9
13
100
0
50
48
16
12
24
1.79
85938--86007
34
2.1
34
100
0
140
25
14
10
50
1.74
86265--86311
2
23.0
2
87
12
69
48
4
0
46
1.21

Tables:   1

The End!