genome.fa.s13126.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013126.1 Corchorus capsularis cultivar CVL-1 contig13147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17741

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--107	2	19.5	2	84	5	53	45	5	0	50	1.23
3547--3579	2	16.5	2	100	0	66	48	0	0	51	1.00
4695--4813	59	2.0	59	95	0	211	34	15	11	38	1.84
14468--14588	40	3.3	38	67	23	105	45	9	21	23	1.81
14439--14709	71	3.8	71	92	1	404	42	9	23	23	1.84
14508--14626	31	3.6	31	69	23	98	47	7	21	24	1.76
14446--14761	71	4.5	71	88	1	400	42	10	22	24	1.84
14806--14914	37	2.9	37	87	2	157	44	11	17	26	1.82
14830--14941	37	3.0	38	84	10	144	47	9	17	25	1.78
14929--15092	41	4.1	41	82	10	232	46	10	18	23	1.81
14891--15092	77	2.5	75	79	12	192	47	10	18	23	1.80
14929--15092	77	2.1	75	85	10	195	46	10	18	23	1.81
15099--15229	35	3.8	35	86	6	171	48	9	12	30	1.72
15271--15582	37	8.8	37	80	7	278	41	7	26	24	1.82
15289--15526	32	7.0	32	79	10	174	40	7	27	23	1.82
15289--15563	101	2.6	98	83	9	250	40	7	27	24	1.81
15359--15563	101	2.0	103	92	4	342	41	6	26	25	1.79
15556--15627	32	2.2	32	95	0	126	37	9	22	30	1.86
15381--15613	69	3.4	66	70	21	176	40	7	25	27	1.82
15573--15757	36	5.2	36	74	13	154	42	9	20	27	1.83
15669--15795	38	3.4	37	70	17	111	51	9	15	23	1.73
15633--15796	73	2.2	73	93	1	274	48	9	17	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15657--15774	37	3.2	37	67	20	93	48	8	17	25	1.75
15669--15795	37	3.4	36	70	15	107	51	9	15	23	1.73

Tables:   1

The End!