Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013128.1 Corchorus capsularis cultivar CVL-1 contig13149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41963

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--629
220
2.6
219
88
2
869
36
20
7
35
1.81
784--856
21
3.3
21
70
17
67
65
1
23
9
1.30
806--881
12
6.6
12
74
17
72
64
1
28
5
1.23
784--886
45
2.3
45
94
3
181
64
1
25
8
1.33
2079--2126
25
2.0
24
95
0
78
47
0
12
39
1.41
2081--2138
12
4.8
12
80
4
71
50
0
13
36
1.42
11170--11431
127
2.1
129
84
8
342
30
19
10
39
1.85
13305--13623
157
2.0
158
95
1
577
37
11
25
25
1.90
14832--14869
19
2.0
19
100
0
76
42
15
0
42
1.47
16904--16982
29
2.7
29
86
7
115
32
20
5
41
1.74
19661--19735
16
4.8
16
85
4
91
4
14
40
41
1.65
20371--20407
19
1.9
19
89
10
58
40
2
8
48
1.47
20441--20488
19
2.5
18
80
12
51
33
2
4
60
1.27
20504--20551
16
3.0
16
68
0
51
8
16
45
29
1.76
30099--30132
2
17.5
2
93
6
61
50
0
0
50
1.00
31553--31708
78
2.0
78
81
2
179
30
16
26
26
1.96
38276--38320
20
2.5
17
80
19
56
51
20
15
13
1.76
38895--38926
13
2.5
13
94
0
55
9
46
6
37
1.61
39027--39103
40
1.9
40
91
0
127
27
15
16
40
1.89
39428--39566
73
2.0
70
89
9
214
40
23
4
31
1.74
39584--39632
21
2.3
21
89
0
71
46
14
18
20
1.83
41005--41037
14
2.4
14
90
5
50
9
45
6
39
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40533--41236
270
2.6
268
88
3
1054
32
18
15
33
1.93

Tables:   1

The End!