genome.fa.s13129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013129.1 Corchorus capsularis cultivar CVL-1 contig13150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44329

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2996--3037	15	2.7	16	81	3	50	69	11	2	16	1.29
3451--3484	16	2.2	16	89	5	52	58	8	2	29	1.43
4766--4801	19	1.9	18	88	5	54	33	22	2	41	1.68
6374--6441	34	2.1	32	83	5	82	54	13	2	29	1.53
11895--11921	6	4.5	6	100	0	54	29	0	14	55	1.40
14864--14894	12	2.7	12	95	5	55	87	0	12	0	0.55
14863--14895	11	2.7	13	86	13	52	87	0	12	0	0.53
16011--16176	59	2.9	57	77	7	190	24	18	15	41	1.89
15995--16163	57	2.9	58	78	5	173	24	18	15	41	1.89
16296--16330	18	1.9	18	88	0	52	25	14	5	54	1.62
16183--16725	302	1.8	296	81	9	661	23	19	16	41	1.90
16413--16772	64	5.7	64	91	2	541	23	18	14	42	1.88
16598--16632	18	1.9	18	88	0	52	25	14	5	54	1.62
15927--16772	128	6.8	128	77	13	683	22	18	15	42	1.89
16662--16696	18	1.9	18	88	0	52	25	14	5	54	1.62
17259--17301	15	3.0	15	84	15	56	76	0	23	0	0.78
20418--20474	21	2.7	20	78	10	51	49	1	7	42	1.40
26370--26401	12	2.7	12	100	0	64	0	15	31	53	1.43
26610--26644	11	3.0	12	83	8	54	42	0	0	57	0.99
26783--26825	20	2.1	21	86	4	61	20	18	20	39	1.93
26813--26895	42	2.0	43	85	7	116	36	24	16	22	1.95
27931--27970	21	1.9	21	84	0	53	22	22	15	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28076--28113	3	12.7	3	94	0	67	31	2	0	65	1.06
28853--28890	15	2.4	16	86	8	51	65	13	5	15	1.43
44266--44328	30	2.1	30	93	0	108	9	26	41	22	1.84

Tables:   1

The End!