Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013135.1 Corchorus capsularis cultivar CVL-1 contig13156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26930

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
366--438
20
3.4
20
68
21
58
36
17
8
36
1.80
293--438
45
3.2
45
93
0
238
36
19
7
36
1.80
428--452
12
2.1
12
100
0
50
32
20
8
40
1.81
404--471
31
2.2
32
92
5
113
35
19
8
36
1.83
480--522
17
2.5
17
80
0
50
2
18
0
79
0.85
479--530
19
2.8
18
85
5
59
3
19
0
76
0.93
501--531
12
2.5
12
94
5
53
6
9
0
83
0.79
8779--8858
27
2.9
28
83
3
99
50
23
7
18
1.73
9273--9346
37
2.1
36
92
5
123
37
9
25
27
1.87
10209--10265
28
2.0
29
89
6
89
24
7
22
45
1.77
14983--15019
19
2.0
19
89
5
58
64
0
0
35
0.94
15555--15586
15
2.2
14
94
5
55
34
0
0
65
0.93
15560--15598
20
2.0
20
84
0
51
30
0
2
66
1.05
23017--23045
1
29.0
1
100
0
58
100
0
0
0
0.00
23375--23543
84
2.0
84
100
0
338
37
9
5
46
1.61
24662--24716
16
3.4
16
80
12
60
5
7
36
50
1.53
25288--25313
3
8.7
3
100
0
52
65
0
0
34
0.93
25989--26013
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!