Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013141.1 Corchorus capsularis cultivar CVL-1 contig13162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47677

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
325--389
33
1.9
34
87
3
96
36
6
20
36
1.77
466--840
35
10.3
35
67
13
128
32
8
19
40
1.81
314--886
148
3.9
148
91
2
899
32
7
20
38
1.81
517--625
43
2.6
43
85
7
134
33
7
20
39
1.80
743--801
28
2.1
28
83
0
73
28
11
23
35
1.91
1016--1286
37
7.3
37
76
5
260
43
16
16
23
1.88
1018--1290
74
3.7
74
87
3
379
43
16
17
23
1.88
1919--2084
87
1.9
87
89
0
260
27
23
10
38
1.88
2602--2631
15
2.1
14
93
6
51
3
13
0
83
0.77
2888--2952
14
4.6
14
78
16
55
30
10
10
47
1.73
2902--2939
14
2.6
14
91
4
58
28
7
13
50
1.69
3015--3044
16
1.9
15
93
6
51
0
10
0
90
0.47
3018--3042
10
2.5
10
100
0
50
0
8
0
92
0.40
3024--3055
13
2.5
13
95
5
57
3
6
0
90
0.53
6383--6426
15
3.1
15
70
29
51
25
6
4
63
1.38
8807--8844
3
12.3
3
94
5
67
36
0
0
63
0.95
9237--9364
59
2.2
59
91
1
204
16
23
3
57
1.54
9399--9494
46
2.1
46
100
0
192
45
6
6
41
1.54
9948--9996
22
2.3
21
89
3
71
61
10
0
28
1.29
14585--14615
2
15.5
2
93
0
53
54
0
0
45
0.99
14587--14619
10
3.3
10
95
0
57
57
0
0
42
0.98
14849--15029
91
2.0
90
97
1
344
32
14
20
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15496--15525
2
15.0
2
100
0
60
50
50
0
0
1.00
15840--15871
13
2.4
14
85
15
50
62
15
6
15
1.51
38613--38642
15
1.9
16
93
6
53
80
3
10
6
1.01
42663--42694
16
2.0
16
93
0
55
9
6
3
81
0.97
46721--46748
4
7.0
4
100
0
56
75
25
0
0
0.81

Tables:   1

The End!