Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013146.1 Corchorus capsularis cultivar CVL-1 contig13167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74682

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
194--255
31
2.0
31
96
0
115
40
6
17
35
1.76
7490--7514
6
4.2
6
100
0
50
16
20
32
32
1.94
12952--12984
2
16.5
2
100
0
66
48
0
0
51
1.00
13200--13699
22
22.5
22
68
19
150
36
16
9
38
1.81
13419--13498
23
3.5
22
90
8
117
41
16
7
35
1.76
13416--13520
45
2.3
45
80
9
124
39
15
8
37
1.78
13658--13696
20
2.0
20
100
0
78
25
23
10
41
1.86
13836--14008
22
7.8
24
71
20
101
34
14
10
41
1.80
13926--13988
23
2.7
24
81
13
69
34
14
11
39
1.81
14041--14154
22
5.2
22
74
12
99
37
21
7
34
1.80
14041--14154
44
2.6
44
78
9
115
37
21
7
34
1.80
14244--14375
22
6.0
22
72
11
110
37
18
9
34
1.84
14242--14341
44
2.3
43
87
5
146
34
20
11
35
1.87
14244--14375
66
2.0
66
82
5
160
37
18
9
34
1.84
14596--14902
167
1.8
166
87
7
462
43
8
11
36
1.71
14904--14983
38
2.1
38
88
6
119
60
11
15
13
1.60
15091--15158
31
2.2
32
84
10
95
51
4
13
30
1.60
15099--15164
31
2.1
31
88
5
98
51
4
16
27
1.64
15740--15813
38
1.9
39
91
2
123
36
17
5
40
1.73
17194--17219
12
2.2
12
100
0
52
50
15
0
34
1.45
18222--18247
12
2.2
12
100
0
52
50
15
0
34
1.45
21612--21701
45
2.0
45
91
0
144
34
20
22
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23180--23208
14
2.1
14
100
0
58
58
13
13
13
1.63
27552--27590
5
7.8
5
94
0
60
23
0
0
76
0.78
53650--53675
3
8.7
3
100
0
52
0
30
0
69
0.89
53867--53893
3
9.0
3
100
0
54
66
0
33
0
0.92
54268--54666
196
2.0
197
97
0
755
33
20
7
38
1.81
54709--54745
15
2.5
15
100
0
74
51
0
24
24
1.49
55974--56786
407
2.0
407
96
0
1491
30
10
17
40
1.84
56696--57763
439
2.4
436
80
6
1206
31
12
12
43
1.80
59053--59109
30
1.9
30
85
7
80
45
7
17
29
1.75
66807--66849
21
2.0
21
82
8
52
11
6
4
76
1.13
67733--67761
7
4.1
7
100
0
58
86
0
13
0
0.58
69835--69864
15
2.0
15
93
0
51
23
6
6
63
1.43
70604--70666
11
5.7
11
83
5
56
53
19
14
12
1.72

Tables:   1

The End!