Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013148.1 Corchorus capsularis cultivar CVL-1 contig13169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42599

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
861--932
36
2.0
36
91
5
119
22
23
33
20
1.97
4566--4604
21
1.9
21
89
5
62
64
23
5
7
1.40
4680--4732
14
3.8
14
92
0
88
50
28
7
13
1.68
4976--5005
2
15.0
2
100
0
60
50
0
0
50
1.00
7760--7906
79
1.9
75
90
5
231
41
21
7
29
1.80
9108--9215
33
3.3
33
83
5
112
7
26
40
25
1.82
25003--25044
15
2.8
15
85
0
57
50
9
7
33
1.62
25861--26076
73
2.8
73
85
5
252
47
16
11
24
1.80
25859--26076
37
5.7
37
85
8
267
47
16
11
24
1.80
26544--26618
36
2.1
36
92
0
123
52
14
13
20
1.75
30583--30794
113
1.9
113
95
4
381
32
18
9
39
1.83
30822--30861
20
2.0
20
100
0
80
20
15
20
45
1.86
35704--35743
18
2.2
18
86
4
53
45
5
20
30
1.72
41351--41390
18
2.2
18
86
4
53
45
5
20
30
1.72

Tables:   1

The End!