genome.fa.s13149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013149.1 Corchorus capsularis cultivar CVL-1 contig13170, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51562

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6938--7000	30	2.1	30	85	5	83	22	33	14	30	1.93
22798--22868	31	2.3	31	87	7	99	28	18	4	49	1.66
23173--23210	19	2.0	20	85	15	53	28	5	2	63	1.30
27007--27062	21	2.8	20	71	10	53	39	8	16	35	1.80
27025--27155	43	3.0	43	88	1	190	38	8	16	36	1.78
27112--27287	35	5.0	35	75	15	121	38	6	17	37	1.77
27139--27178	21	1.9	21	84	0	53	45	2	15	37	1.59
27721--27779	22	2.6	22	78	5	64	33	8	18	38	1.81
27738--27786	22	2.2	22	85	0	62	26	6	24	42	1.78
27822--27961	22	6.4	21	74	13	88	38	7	17	36	1.79
27986--28058	25	3.3	23	77	12	64	41	8	15	35	1.77
28059--28130	22	3.3	22	86	0	90	41	9	15	33	1.80
28254--28812	22	25.7	22	68	16	193	38	10	14	36	1.80
28596--28681	45	1.9	45	83	4	111	33	10	16	39	1.83
35817--35842	2	13.0	2	100	0	52	50	0	0	50	1.00
41170--41290	22	5.5	22	82	7	111	41	15	12	30	1.84
41170--41271	44	2.3	43	84	3	132	40	15	11	32	1.84
41188--41337	66	2.3	66	81	4	160	41	13	12	33	1.81
41364--41440	22	3.5	22	82	5	84	38	5	22	33	1.76
43098--43175	34	2.3	34	95	0	138	30	3	20	44	1.69
45736--45800	30	2.2	31	83	5	80	29	10	16	43	1.82
48962--48990	15	1.9	15	100	0	58	20	3	27	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50688--50737	16	3.4	16	71	25	56	36	10	34	20	1.86
50666--50736	27	2.6	27	93	0	124	39	11	28	21	1.87

Tables:   1

The End!