Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013157.1 Corchorus capsularis cultivar CVL-1 contig13178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2168
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25


Found at i:1724 original size:21 final size:21

Alignment explanation


    Indices: 1698--1737  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1688 ACCATGGACG

                                 
       1698 AGACAGATACAGAAATGAAAA
          1 AGACAGATACAGAAATGAAAA

                    *          
       1719 AGACAGATTCAGAAATGAA
          1 AGACAGATACAGAAATGAA

       1738 GAAGTTCAAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.57, C:0.10, G:0.20, T:0.12


Consensus pattern (21 bp):   
AGACAGATACAGAAATGAAAA
Done.