Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013163.1 Corchorus capsularis cultivar CVL-1 contig13184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41375
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Found at i:2721 original size:33 final size:33
Alignment explanation
Indices: 2684--2749 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
2674 AGCCAGTAGC
2684 CGATGCTTTGGAAGACACTGTCAGCAAATGCGA
1 CGATGCTTTGGAAGACACTGTCAGCAAATGCGA
2717 CGATGCTTTGGAAGACACTGTCAGCAAATGCGA
1 CGATGCTTTGGAAGACACTGTCAGCAAATGCGA
2750 TGAAGCCCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.21
Consensus pattern (33 bp):
CGATGCTTTGGAAGACACTGTCAGCAAATGCGA
Found at i:3327 original size:142 final size:142
Alignment explanation
Indices: 3066--3330 Score: 399
Period size: 142 Copynumber: 1.9 Consensus size: 142
3056 CCTTGAATGA
* * * *
3066 TGAATTAGTAGGTTCATGCATCCTGGCATCATTTGCATGGAGTCGAAAGCCCTGATTATTCACAA
1 TGAATTAGTAAGTTCATGCATCATGGCATCATCTGCATGGAGTCAAAAGCCCTGATTATTCACAA
* *
3131 AATTGTAAATAGTCACGGTTTTTGACTTGTGGAAGTTCCTACCAGGATGGGGAGGGACCGTACAT
66 AATTGTAAATAGTCACGGCTTTTGACTTGTGGAAGTTCCTACCAGAATGGGGAGGGACCGTACAT
3196 CTTTAAGATTCT
131 CTTTAAGATTCT
* * *
3208 TGAATTAGTAAGTTCATGCATCATGGCATCATCTGCATGGAGTCAAAAGCCCTGATTGTTCAGAG
1 TGAATTAGTAAGTTCATGCATCATGGCATCATCTGCATGGAGTCAAAAGCCCTGATTATTCACAA
* *
3273 AATTGTAAATGGTCACGGCTTTTGACTTGT-GAATGTTCCTACCA-AATTGTGGAGGGAC
66 AATTGTAAATAGTCACGGCTTTTGACTTGTGGAA-GTTCCTACCAGAA-TGGGGAGGGAC
3331 TCCACACCTG
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
141 4 0.04
142 106 0.96
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (142 bp):
TGAATTAGTAAGTTCATGCATCATGGCATCATCTGCATGGAGTCAAAAGCCCTGATTATTCACAA
AATTGTAAATAGTCACGGCTTTTGACTTGTGGAAGTTCCTACCAGAATGGGGAGGGACCGTACAT
CTTTAAGATTCT
Found at i:14331 original size:50 final size:50
Alignment explanation
Indices: 14204--14363 Score: 286
Period size: 50 Copynumber: 3.2 Consensus size: 50
14194 TTCATTGAAT
14204 TTAAAAAGAGTTAAGAAAAGAAAGTACAGTCAAGGTCCTAAGTTGGGCAA
1 TTAAAAAGAGTTAAGAAAAGAAAGTACAGTCAAGGTCCTAAGTTGGGCAA
14254 TT-AAAAGAGTTAAGAAAAGAAAGTACAGTCAAGGTCCTAAGTTGGGCAA
1 TTAAAAAGAGTTAAGAAAAGAAAGTACAGTCAAGGTCCTAAGTTGGGCAA
* *
14303 TTAAAAAGAATTAAGAAAAGAAAATACAGTCAAGGTCCTAAGTTGGGCAA
1 TTAAAAAGAGTTAAGAAAAGAAAGTACAGTCAAGGTCCTAAGTTGGGCAA
*
14353 TTAAGAAGAGT
1 TTAAAAAGAGT
14364 AAAGTCTTAA
Statistics
Matches: 105, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
49 49 0.47
50 56 0.53
ACGTcount: A:0.47, C:0.09, G:0.23, T:0.21
Consensus pattern (50 bp):
TTAAAAAGAGTTAAGAAAAGAAAGTACAGTCAAGGTCCTAAGTTGGGCAA
Found at i:14386 original size:31 final size:31
Alignment explanation
Indices: 14351--14471 Score: 82
Period size: 31 Copynumber: 3.6 Consensus size: 31
14341 TAAGTTGGGC
* *
14351 AATTAAGAAGAGTAAAGTCTTAATTCAGGGT
1 AATTAAGAAAAGAAAAGTCTTAATTCAGGGT
* * *
14382 AATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGC
1 AATTAAGAAAAGAAAAGT-C--TTAA--T--TCA---GGGT
*
14423 AATTAAGAAGAA-TAAAGTCTTAATTCAGGGT
1 AATTAAGAA-AAGAAAAGTCTTAATTCAGGGT
14454 AATTAAGAAAAGAAAAGT
1 AATTAAGAAAAGAAAAGT
14472 ACAGTCAAGG
Statistics
Matches: 68, Mismatches: 10, Indels: 24
0.67 0.10 0.24
Matches are distributed among these distances:
30 2 0.03
31 33 0.49
32 1 0.01
34 5 0.07
36 2 0.03
38 5 0.07
40 1 0.01
41 17 0.25
42 2 0.03
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.24
Consensus pattern (31 bp):
AATTAAGAAAAGAAAAGTCTTAATTCAGGGT
Found at i:14427 original size:72 final size:71
Alignment explanation
Indices: 14311--14603 Score: 523
Period size: 72 Copynumber: 4.1 Consensus size: 71
14301 AATTAAAAAG
*
14311 AATTAAGAAAAGAAAATACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAGTAAAGTCTTAATT
1 AATTAAGAAAAGAAAATACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAATT
14376 CAGGGT
66 CAGGGT
14382 AATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
1 AATTAAGAAAAGAAAA-TACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
14447 TCAGGGT
65 TCAGGGT
14454 AATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
1 AATTAAGAAAAGAAAA-TACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
14519 TCAGGGT
65 TCAGGGT
* * *
14526 AATTAAGAGAAGAAAATACAGTCAAGGTCCTAAGTTGGACAATTAAGAAGAGTAAAGTCTTAATT
1 AATTAAGAAAAGAAAATACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAATT
14591 CAGGGT
66 CAGGGT
*
14597 TATTAAG
1 AATTAAG
14604 TCTAAAAAGG
Statistics
Matches: 216, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
71 75 0.35
72 141 0.65
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (71 bp):
AATTAAGAAAAGAAAATACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAATT
CAGGGT
Found at i:14631 original size:144 final size:144
Alignment explanation
Indices: 14311--14603 Score: 527
Period size: 143 Copynumber: 2.0 Consensus size: 144
14301 AATTAAAAAG
*
14311 AATTAAGAAAAGAAAA-TACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAGTAAAGTCTTAAT
1 AATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
*
14375 TCAGGGTAATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAG
66 TCAGGGTAATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGACAATTAAGAAGAATAAAG
14440 TCTTAATTCAGGGT
131 TCTTAATTCAGGGT
14454 AATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
1 AATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
* *
14519 TCAGGGTAATTAAGAGAAGAAAA-TACAGTCAAGGTCCTAAGTTGGACAATTAAGAAGAGTAAAG
66 TCAGGGTAATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGACAATTAAGAAGAATAAAG
14583 TCTTAATTCAGGGT
131 TCTTAATTCAGGGT
*
14597 TATTAAG
1 AATTAAG
14604 TCTAAAAAGG
Statistics
Matches: 144, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
143 75 0.52
144 69 0.48
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (144 bp):
AATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGGCAATTAAGAAGAATAAAGTCTTAAT
TCAGGGTAATTAAGAAAAGAAAAGTACAGTCAAGGTCCTAAGTTGGACAATTAAGAAGAATAAAG
TCTTAATTCAGGGT
Found at i:14704 original size:42 final size:42
Alignment explanation
Indices: 14640--15046 Score: 564
Period size: 42 Copynumber: 9.7 Consensus size: 42
14630 AATTTGGATA
* *
14640 AATCCAGGGTGATTAAGAAAAGTCAAACTTAGTTAAAGTCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
*
14682 AATCTAGGGTGATTAAGAAAAGTCAAACATGGTTAGAA-TCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTA-AAGTCCT
* * *
14724 AATCCTGGGTGATTAAGAAAAGTCAAACATGATTAGAGTCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
* * *
14766 ATTCCAGGGTGATTAAGAAAGGTCAAACATGGTTAGAGTCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
* * * **
14808 AATCCAGGGAGATTAAGAAAAGTCAAACTTAGTTAAAGTTTT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
*
14850 AATCCAGGGTGATTAAGAAAGGTCAAACATGGTTAAAGTCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
** **
14892 AATCCAGGGTGATTAAGAAAAGTCAAACATATTTTGAGTCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
* *
14934 AATCCAGGGTAATTAAGAAAGGTCAAACATGGTTAAAGTCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
* * *
14976 AATCTAGCGTGATTAAGAAAAGTGAAACATGGTTAAAGTCCT
1 AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
* *
15018 ACTCCAGGGTGATTAGGAAAAGTCAAACA
1 AATCCAGGGTGATTAAGAAAAGTCAAACA
15047 CGGTCAGAGA
Statistics
Matches: 317, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
41 1 0.00
42 314 0.99
43 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (42 bp):
AATCCAGGGTGATTAAGAAAAGTCAAACATGGTTAAAGTCCT
Found at i:15103 original size:36 final size:36
Alignment explanation
Indices: 15056--15227 Score: 200
Period size: 36 Copynumber: 4.6 Consensus size: 36
15046 ACGGTCAGAG
*
15056 AACTTAATTCAGTGTAATTAAGAAAAGACAAGCACA
1 AACTTAATTCAGGGTAATTAAGAAAAGACAAGCACA
15092 AACTTAATTCAGGGTAATTAAGAAAAGACAAGCACA
1 AACTTAATTCAGGGTAATTAAGAAAAGACAAGCACA
* * * *
15128 GACTTAATTCAAGGTAATTAAGTAAAGATAAGCACA
1 AACTTAATTCAGGGTAATTAAGAAAAGACAAGCACA
* * *
15164 GACTTAATTTCAAGGAAGGAAATTAGGTAAAAGACAAGCACA
1 AACTTAA-TTC-A-G--GGTAATTAAG-AAAAGACAAGCACA
* *
15206 TACTTAATTAAGGGTAATTAAG
1 AACTTAATTCAGGGTAATTAAG
15228 TAAATCAACA
Statistics
Matches: 116, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
36 74 0.64
37 11 0.09
38 1 0.01
39 1 0.01
40 1 0.01
41 10 0.09
42 18 0.16
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (36 bp):
AACTTAATTCAGGGTAATTAAGAAAAGACAAGCACA
Found at i:15222 original size:78 final size:72
Alignment explanation
Indices: 15057--15231 Score: 208
Period size: 78 Copynumber: 2.3 Consensus size: 72
15047 CGGTCAGAGA
* * * *
15057 ACTTAATTCAGTGTAATTAAGAAAAGACAAGCACAAACTTAATTCAGGGTAATTAAGAAAAGACA
1 ACTTAATTAAGGGTAATTAAGTAAAGACAAGCACAAACTTAATTCAGGGAAATTAAGAAAAGACA
15122 AGCACAG
66 AGCACAG
* * *
15129 ACTTAATTCAA-GGTAATTAAGTAAAGATAAGCACAGACTTAATTTCAAGGAAGGAAATTAGGTA
1 ACTTAATT-AAGGGTAATTAAGTAAAGACAAGCACAAACTTAA-TTC-A-G--GGAAATTAAG-A
*
15193 AAAGACAAGCACAT
59 AAAGACAAGCACAG
15207 ACTTAATTAAGGGTAATTAAGTAAA
1 ACTTAATTAAGGGTAATTAAGTAAA
15232 TCAACAAAGA
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
72 35 0.40
73 4 0.05
74 1 0.01
75 1 0.01
77 10 0.11
78 36 0.41
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.23
Consensus pattern (72 bp):
ACTTAATTAAGGGTAATTAAGTAAAGACAAGCACAAACTTAATTCAGGGAAATTAAGAAAAGACA
AGCACAG
Found at i:15370 original size:37 final size:37
Alignment explanation
Indices: 15317--15465 Score: 219
Period size: 37 Copynumber: 4.1 Consensus size: 37
15307 TTAACCTAAT
* *
15317 GGGA-TTAAGTAAAGAAAATGACTTAGTTCCAAGGAA
1 GGGAGTTAAGTAGAGAAAAGGACTTAGTTCCAAGGAA
*
15353 GGGAGTTAGGTAGAGAAAAGGACTTAGTTCCAAGGAA
1 GGGAGTTAAGTAGAGAAAAGGACTTAGTTCCAAGGAA
15390 GGGAGTTAAGTAGAGAAAAGGACTTAGTTCCAAGGAA
1 GGGAGTTAAGTAGAGAAAAGGACTTAGTTCCAAGGAA
* ** * *
15427 GGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAA
1 GGGAGTTAAGTAGAGAAAAGGACTTAGTTCCAAGGAA
15464 GG
1 GG
15466 AAATTGAGTC
Statistics
Matches: 103, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
36 4 0.04
37 99 0.96
ACGTcount: A:0.40, C:0.07, G:0.31, T:0.21
Consensus pattern (37 bp):
GGGAGTTAAGTAGAGAAAAGGACTTAGTTCCAAGGAA
Found at i:15514 original size:37 final size:37
Alignment explanation
Indices: 15481--15564 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
15471 GAGTCAAGTC
*
15481 AGGGGCTTAATTCAGGGTAATTAAGTAGCGTCAATAA
1 AGGGACTTAATTCAGGGTAATTAAGTAGCGTCAATAA
* *
15518 AGGGACTTAATTCAGGGTAATTAAGTGGAGTCAATAA
1 AGGGACTTAATTCAGGGTAATTAAGTAGCGTCAATAA
*
15555 A-GAACTTAAT
1 AGGGACTTAAT
15565 CTAAAAAGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
36 8 0.19
37 35 0.81
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (37 bp):
AGGGACTTAATTCAGGGTAATTAAGTAGCGTCAATAA
Found at i:15590 original size:37 final size:36
Alignment explanation
Indices: 15549--15658 Score: 109
Period size: 37 Copynumber: 3.0 Consensus size: 36
15539 TAAGTGGAGT
*
15549 CAATAAAGAACTTAATCTAAAAAGAGATTAAGT-AAAA
1 CAATAAAGAACTTAATCT-AAGAGA-ATTAAGTCAAAA
* * * *
15586 CAATAAA-AGACTTAAT-TCAGGGTAATTAAGTGAAAT
1 CAATAAAGA-ACTTAATCTAAGAG-AATTAAGTCAAAA
15622 CAATAAAGAACTTAATCTGAAGAGAATTAAGTCAAAA
1 CAATAAAGAACTTAATCT-AAGAGAATTAAGTCAAAA
15659 TAAGAGCAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
35 9 0.15
36 20 0.34
37 27 0.46
38 3 0.05
ACGTcount: A:0.54, C:0.09, G:0.14, T:0.24
Consensus pattern (36 bp):
CAATAAAGAACTTAATCTAAGAGAATTAAGTCAAAA
Found at i:15603 original size:73 final size:74
Alignment explanation
Indices: 15512--15658 Score: 226
Period size: 73 Copynumber: 2.0 Consensus size: 74
15502 TAAGTAGCGT
* * *
15512 CAATAAAGGGACTTAATTCAGGGTAATTAAGTGGAGTCAATAAAGAACTTAATCTAAAAAGAGAT
1 CAATAAAGAGACTTAATTCAGGGTAATTAAGTGAAATCAATAAAGAACTTAATCTAAAAAGA-AT
15577 TAAGT-AAAA
65 TAAGTCAAAA
* *
15586 CAATAAA-AGACTTAATTCAGGGTAATTAAGTGAAATCAATAAAGAACTTAATCTGAAGAGAATT
1 CAATAAAGAGACTTAATTCAGGGTAATTAAGTGAAATCAATAAAGAACTTAATCTAAAAAGAATT
15650 AAGTCAAAA
66 AAGTCAAAA
15659 TAAGAGCAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
72 7 0.10
73 53 0.79
74 7 0.10
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.24
Consensus pattern (74 bp):
CAATAAAGAGACTTAATTCAGGGTAATTAAGTGAAATCAATAAAGAACTTAATCTAAAAAGAATT
AAGTCAAAA
Found at i:23437 original size:21 final size:21
Alignment explanation
Indices: 23411--23460 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
23401 GCACTGGAGT
*
23411 ACATGGGTCGCGAGGCAAACC
1 ACATGGGTCGCGAAGCAAACC
* * *
23432 ACATGGGGCGCGAAGCATAGC
1 ACATGGGTCGCGAAGCAAACC
23453 ACATGGGT
1 ACATGGGT
23461 GCCCAGCGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.24, G:0.36, T:0.12
Consensus pattern (21 bp):
ACATGGGTCGCGAAGCAAACC
Found at i:31560 original size:153 final size:153
Alignment explanation
Indices: 31282--31587 Score: 603
Period size: 153 Copynumber: 2.0 Consensus size: 153
31272 TCCAAGAACC
31282 CTCCTAAACCGACCTAGCATTGAATGCAAGGTCTAGCGGCGGTTTACATAGGAACAGTCTAGAAA
1 CTCCTAAACCGACCTAGCATTGAATGCAAGGTCTAGCGGCGGTTTACATAGGAACAGTCTAGAAA
31347 CTATCCTAAATTACAACCAATAGGAAAAATAGATGAGGATTGGACTTAATTAAACAGGGCCCAAC
66 CTATCCTAAATTACAACCAATAGGAAAAATAGATGAGGATTGGACTTAATTAAACAGGGCCCAAC
31412 CCTAATCAAGGTGCAAACTAAGT
131 CCTAATCAAGGTGCAAACTAAGT
*
31435 CTCCTAAACCGACCTAGCATTGAATGCAAGGTCTAGCGGTGGTTTACATAGGAACAGTCTAGAAA
1 CTCCTAAACCGACCTAGCATTGAATGCAAGGTCTAGCGGCGGTTTACATAGGAACAGTCTAGAAA
31500 CTATCCTAAATTACAACCAATAGGAAAAATAGATGAGGATTGGACTTAATTAAACAGGGCCCAAC
66 CTATCCTAAATTACAACCAATAGGAAAAATAGATGAGGATTGGACTTAATTAAACAGGGCCCAAC
31565 CCTAATCAAGGTGCAAACTAAGT
131 CCTAATCAAGGTGCAAACTAAGT
31588 AATTAACTAA
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (153 bp):
CTCCTAAACCGACCTAGCATTGAATGCAAGGTCTAGCGGCGGTTTACATAGGAACAGTCTAGAAA
CTATCCTAAATTACAACCAATAGGAAAAATAGATGAGGATTGGACTTAATTAAACAGGGCCCAAC
CCTAATCAAGGTGCAAACTAAGT
Found at i:32030 original size:27 final size:27
Alignment explanation
Indices: 31978--32030 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
31968 AATCAACCTT
* *
31978 TCCATGATAACCATTGTGCTCTTCATG
1 TCCATGATAACCATTGTGCGCATCATG
*
32005 TCCATGATAAGCCCTTG-GCGCATCAT
1 TCCATGATAA-CCATTGTGCGCATCAT
32031 CCCCTCTGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (27 bp):
TCCATGATAACCATTGTGCGCATCATG
Done.