Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013166.1 Corchorus capsularis cultivar CVL-1 contig13187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20449
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31


Found at i:5601 original size:18 final size:17

Alignment explanation


    Indices: 5578--5627  Score: 64
    Period size: 18  Copynumber: 2.8  Consensus size: 17

       5568 GATGGCTTGG

                              
       5578 ATTGCCATTCCTGATGCC
          1 ATTGCCATT-CTGATGCC

                           *  
       5596 ATTGCCATTCTCGATTCC
          1 ATTGCCATTCT-GATGCC

                          
       5614 ATTGCCATTTCTGA
          1 ATTGCCA-TTCTGA

       5628 CATGCGGTGG


Statistics
Matches: 29,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  17    2  0.07
  18   23  0.79
  19    4  0.14

ACGTcount: A:0.18, C:0.30, G:0.14, T:0.38


Consensus pattern (17 bp):   
ATTGCCATTCTGATGCC
Done.