genome.fa.s13168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013168.1 Corchorus capsularis cultivar CVL-1 contig13189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86582

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910--2281	86	4.5	84	80	12	382	43	5	15	34	1.71
1900--2281	162	2.3	163	87	5	533	43	5	15	34	1.71
10437--10510	33	2.2	33	90	0	121	33	10	17	37	1.85
10448--10522	33	2.3	33	90	0	114	25	10	22	41	1.86
22082--22111	7	4.4	7	91	8	53	73	0	0	26	0.84
23006--23084	22	3.5	22	78	3	77	37	3	7	50	1.49
23023--23097	22	3.4	21	78	7	69	41	6	5	46	1.53
23180--23237	22	2.7	22	72	2	55	24	10	13	51	1.72
26345--26385	7	6.1	7	77	11	50	53	19	14	12	1.72
26342--26385	13	3.4	14	87	12	67	50	20	15	13	1.78
27232--27261	2	15.0	2	100	0	60	50	0	0	50	1.00
27438--27472	15	2.2	16	90	5	54	80	0	20	0	0.72
30561--30593	2	16.5	2	93	0	57	48	0	3	48	1.17
30591--30620	3	10.0	3	100	0	60	66	0	0	33	0.92
33395--33420	12	2.2	12	100	0	52	42	0	15	42	1.47
33432--33489	21	2.8	21	92	2	91	51	0	13	34	1.42
34015--34105	2	46.0	2	71	18	57	42	3	4	49	1.39
34497--34582	45	1.9	45	100	0	172	26	23	17	32	1.96
43089--43123	3	11.7	3	93	0	61	34	2	0	62	1.10
43012--43231	108	2.0	108	99	0	431	28	11	13	46	1.78
43197--43241	3	15.0	3	100	0	90	33	0	0	66	0.92
43494--43551	17	3.3	18	71	9	66	10	36	37	15	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43448--43577	34	4.0	33	80	4	147	13	33	36	16	1.89
44161--44240	37	2.2	37	86	0	106	43	18	11	26	1.84
44168--44308	38	3.8	37	77	10	133	40	21	12	24	1.89
44439--44473	11	3.2	11	92	8	54	0	17	0	82	0.66
44951--45000	26	2.0	25	84	11	66	48	32	6	14	1.67
45081--45111	15	2.1	14	94	5	53	35	6	0	58	1.24
48237--48272	19	1.9	18	88	5	54	33	22	2	41	1.68
49795--49846	25	2.1	25	81	0	59	63	7	9	19	1.48
52581--52986	63	6.4	61	73	13	282	35	14	22	27	1.93
52738--52986	135	1.9	134	85	0	345	36	15	22	25	1.93
52992--53141	49	3.3	48	67	19	113	36	15	28	20	1.93
53003--53083	38	2.1	38	86	4	110	29	16	32	22	1.95
53716--53746	12	2.5	12	94	5	53	80	0	3	16	0.83
56264--56291	13	2.2	13	100	0	56	35	7	17	39	1.78
56953--57017	34	1.9	34	81	12	80	38	20	20	21	1.94
57025--57185	28	5.4	28	70	17	94	32	14	26	25	1.95
57025--57185	61	2.6	61	94	0	277	32	14	26	25	1.95
57053--57152	33	3.2	32	67	18	84	33	14	26	27	1.94
57226--57410	102	1.8	102	86	2	273	36	13	25	24	1.92
57363--57416	28	2.0	27	82	10	65	31	14	27	25	1.95
57412--57636	33	7.3	31	66	20	125	29	14	28	27	1.95
57360--57636	61	4.5	61	86	5	360	30	14	28	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57411--57647	121	2.0	121	94	0	420	30	14	27	27	1.95
57670--57776	47	2.3	47	85	3	144	34	21	22	21	1.97
57755--58277	48	11.0	48	88	2	707	33	17	28	19	1.95
57755--58277	95	5.5	95	88	2	739	33	17	28	19	1.95
57755--58277	143	3.7	142	88	2	755	33	17	28	19	1.95
58327--58509	68	2.6	68	93	3	294	28	20	26	24	1.99
59452--59494	16	2.6	17	85	10	63	4	18	0	76	0.95
59447--59506	12	5.3	12	72	23	51	5	18	0	76	0.96
60180--60279	45	2.2	45	90	0	155	39	18	9	34	1.82
60288--60322	10	3.5	10	85	14	54	0	17	0	82	0.66
62543--62575	16	2.0	17	88	5	50	54	9	18	18	1.69
65164--65588	62	6.6	63	74	12	296	35	14	23	27	1.93
65333--65581	135	1.9	134	85	0	345	35	15	22	26	1.94
65598--65678	38	2.1	38	86	4	110	32	16	29	22	1.95
65636--65736	49	2.1	49	84	3	132	36	13	25	23	1.92
72760--72911	36	4.2	37	87	4	211	29	20	10	39	1.86
72890--72961	32	2.2	32	90	4	110	29	20	11	38	1.87
72904--73071	69	2.5	63	80	17	187	26	25	7	40	1.82
72954--73078	37	3.5	37	77	14	163	24	28	5	41	1.77
72987--73052	32	2.1	32	85	5	89	22	30	6	40	1.78
78134--78441	35	8.6	36	78	8	272	29	19	9	40	1.84
78134--78441	73	4.3	70	82	7	316	29	19	9	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78134--78448	108	2.9	108	90	3	460	29	19	9	41	1.83
78134--78441	143	2.2	141	84	4	386	29	19	9	40	1.84
79136--79178	22	1.9	23	81	13	54	41	11	4	41	1.62
80240--80326	33	2.6	33	87	7	115	9	22	44	22	1.81
80240--80348	33	3.3	32	83	6	103	9	24	43	22	1.83

Tables:   1

The End!