Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013170.1 Corchorus capsularis cultivar CVL-1 contig13191, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35361

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--410
49
8.4
49
77
3
355
24
29
15
30
1.96
1--410
98
4.2
98
84
2
434
24
29
15
30
1.96
2557--2607
25
2.0
25
92
0
84
33
17
19
29
1.95
5999--6078
27
2.8
29
88
7
119
30
10
16
43
1.80
5999--6079
30
2.9
28
90
5
119
29
9
16
44
1.79
6400--6424
1
25.0
1
100
0
50
0
0
0
100
0.00
13484--13514
7
4.4
7
100
0
62
0
12
0
87
0.55
13861--13953
45
2.0
46
85
6
127
43
18
16
22
1.88
13861--13953
44
2.0
47
84
10
122
43
18
16
22
1.88
15489--15522
15
2.3
15
90
10
52
61
5
5
26
1.42
19580--19619
20
2.1
19
85
4
53
47
27
0
25
1.52
27430--27471
21
2.0
21
95
0
75
42
26
9
21
1.83
27820--27858
19
2.1
19
95
0
69
38
17
10
33
1.84
29986--30079
49
1.9
49
93
0
161
23
24
14
37
1.93
30037--30117
38
2.1
38
81
0
90
22
27
16
34
1.95

Tables:   1

The End!