Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013172.1 Corchorus capsularis cultivar CVL-1 contig13193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55210

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2673--2716
15
3.1
15
84
15
51
61
9
4
25
1.45
3135--3194
27
2.3
27
85
2
77
61
6
1
30
1.31
6394--6427
16
2.2
16
89
5
52
58
8
2
29
1.43
9152--9194
10
3.7
12
81
15
54
72
6
6
13
1.27
9150--9194
23
2.0
23
91
4
74
71
6
8
13
1.31
16058--16091
16
2.2
16
89
5
52
58
8
2
29
1.43
24201--24229
2
14.5
2
100
0
58
51
0
0
48
1.00
29452--29630
92
1.9
93
88
1
270
41
14
20
23
1.89
35674--35717
13
3.2
13
76
17
52
84
2
4
9
0.85
37849--37950
33
3.1
33
86
0
141
12
54
4
27
1.58
38164--38429
89
2.9
89
80
7
273
32
15
15
36
1.89
38613--38671
3
19.7
3
86
13
86
67
0
0
32
0.91
38621--38695
20
3.6
21
82
17
77
69
2
0
28
1.02
44904--44935
2
16.0
2
100
0
64
50
0
0
50
1.00
45890--45983
39
2.4
38
82
10
109
40
29
10
19
1.85
46835--46880
20
2.2
21
84
3
58
52
23
6
17
1.68
46820--46880
21
3.0
21
76
9
63
49
27
6
16
1.70
48460--48540
41
2.0
40
85
7
110
23
17
22
37
1.94
50340--50898
72
7.7
73
79
6
591
22
27
19
30
1.98
50481--50896
220
1.9
215
89
2
634
22
27
18
31
1.97

Tables:   1

The End!