Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013173.1 Corchorus capsularis cultivar CVL-1 contig13194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22717

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2018--2106
40
2.2
39
86
7
117
50
6
15
26
1.69
2181--2242
12
5.2
12
88
3
90
58
8
24
9
1.57
2236--2373
11
12.5
11
75
1
105
45
9
19
25
1.80
2211--2373
33
4.9
33
83
1
164
46
9
20
23
1.79
2335--2380
23
1.9
25
86
8
69
54
10
17
17
1.70
2376--3107
36
20.7
35
83
6
863
43
10
21
25
1.84
2375--3122
247
3.0
245
86
5
1015
43
10
21
24
1.83
2375--3107
318
2.3
318
94
0
1281
43
10
21
24
1.84
3340--3405
14
5.0
13
75
23
50
4
19
0
75
0.97
3340--3407
6
10.7
6
74
16
57
4
19
0
76
0.95
5711--5737
13
2.1
13
100
0
54
51
14
33
0
1.43
6200--6278
31
2.6
31
95
2
142
30
29
21
18
1.97
6292--6389
32
2.8
34
76
17
103
45
6
18
29
1.73
6385--6504
61
2.0
61
100
0
240
50
7
15
26
1.71
9070--9163
39
2.4
38
81
13
102
43
28
9
18
1.81
9497--9530
16
2.2
16
89
5
52
58
8
2
29
1.43
11748--11793
20
2.2
21
84
3
58
52
23
6
17
1.68
11722--11796
21
3.6
21
75
10
82
48
26
6
18
1.73
16684--16728
15
2.9
16
80
6
56
13
15
31
40
1.86

Tables:   1

The End!