Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013177.1 Corchorus capsularis cultivar CVL-1 contig13198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51557

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2211--2258
22
2.2
22
85
7
62
18
6
2
72
1.15
2517--2551
10
3.4
10
84
7
52
57
28
8
5
1.52
8319--8354
1
36.0
1
100
0
72
100
0
0
0
0.00
11981--12020
13
3.1
13
85
0
53
45
15
15
25
1.84
12403--12600
41
4.8
41
77
5
195
34
18
13
32
1.90
21578--21607
15
2.0
15
100
0
60
26
13
26
33
1.93
26527--26561
4
8.8
4
100
0
70
0
0
25
74
0.82
30165--30194
1
30.0
1
93
0
51
96
0
3
0
0.21
33032--33056
1
25.0
1
100
0
50
100
0
0
0
0.00
37380--37418
2
19.5
2
89
10
62
48
0
2
48
1.15
38319--38360
18
2.3
18
91
0
66
16
26
33
23
1.96
39523--39549
12
2.2
12
100
0
54
25
59
14
0
1.36
39554--39586
15
2.2
15
94
0
57
30
51
0
18
1.46
40638--40670
6
5.5
6
100
0
66
18
0
0
81
0.68
43567--43618
14
3.2
18
67
27
53
32
11
44
11
1.77
43572--43632
30
2.2
27
88
11
88
34
11
44
9
1.74
43882--43921
13
3.0
13
92
7
71
45
0
7
47
1.31
44372--44406
9
3.9
9
88
0
52
40
11
2
45
1.55
44452--44492
9
4.6
9
84
0
55
41
12
4
41
1.64
48348--48395
26
1.9
26
83
8
64
43
0
2
54
1.12
49774--49838
33
2.0
33
100
0
130
44
15
6
33
1.71
50087--50141
2
30.5
2
73
26
52
49
1
0
49
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50087--50152
12
4.9
14
74
20
52
45
3
0
51
1.16
50090--50151
20
3.2
20
88
9
92
45
3
0
51
1.17
50699--50723
3
8.3
3
100
0
50
36
32
0
32
1.58

Tables:   1

The End!