Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013183.1 Corchorus capsularis cultivar CVL-1 contig13204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7926

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
266--968
35
20.9
35
77
10
698
37
9
19
32
1.85
270--968
132
5.2
131
83
6
732
37
10
19
32
1.85
266--968
101
7.0
101
77
12
653
37
9
19
32
1.85
3797--3850
25
2.2
25
89
0
81
38
5
12
42
1.67
3797--3845
14
3.7
14
76
15
59
42
6
12
38
1.67
4440--4484
23
2.0
23
81
0
54
53
8
13
24
1.68
4450--4497
21
2.2
23
85
7
64
52
8
10
29
1.65
4449--4499
22
2.3
22
80
12
59
52
7
11
27
1.65
6078--6116
8
4.9
8
90
0
60
25
23
2
48
1.63
6078--6123
24
1.9
24
90
0
74
21
23
4
50
1.67
6211--6250
8
5.0
8
84
0
53
25
22
5
47
1.71
6264--6378
35
3.3
34
73
10
106
20
16
21
40
1.91
6264--6470
71
2.9
70
85
3
256
18
18
23
39
1.92
6281--6584
36
8.6
35
71
5
207
18
19
24
37
1.94
6281--6514
71
3.3
71
81
7
251
17
19
24
38
1.93

Tables:   1

The End!