genome.fa.s13186.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013186.1 Corchorus capsularis cultivar CVL-1 contig13207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33197

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107--666	22	25.7	22	69	12	196	36	13	9	40	1.78
222--712	44	11.3	44	70	16	274	37	15	9	38	1.79
415--499	23	3.7	23	84	1	100	37	14	7	41	1.73
374--477	46	2.3	46	85	6	133	38	14	9	37	1.79
376--499	45	2.8	45	80	10	130	37	14	8	38	1.77
633--685	20	2.7	20	96	0	97	30	16	11	41	1.84
791--842	22	2.4	22	83	3	70	36	7	7	48	1.61
770--960	44	4.3	44	73	10	140	35	12	9	42	1.75
857--979	66	1.9	65	83	8	160	36	11	10	41	1.76
854--1204	22	15.8	22	71	17	124	35	16	9	39	1.81
1292--1391	44	2.3	43	87	5	146	33	19	12	36	1.88
1240--1425	22	8.4	22	71	14	114	37	19	9	33	1.85
2621--2715	30	3.1	30	90	4	147	43	4	20	32	1.71
2880--3436	22	25.5	22	67	12	175	35	14	10	39	1.80
3007--3092	45	1.9	45	83	4	111	38	15	11	34	1.83
3183--3267	23	3.7	23	84	1	91	37	15	7	40	1.74
3161--3267	45	2.4	45	78	9	119	36	14	9	39	1.79
3424--3470	19	2.4	20	78	7	51	25	14	10	48	1.76
3580--3827	22	11.3	22	70	10	150	34	13	10	42	1.78
3580--3887	22	13.8	22	69	18	90	35	13	9	41	1.78
3848--3898	22	2.3	22	82	0	66	41	19	7	31	1.80
3998--4141	22	6.3	22	70	7	83	38	20	9	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3980--4063	22	3.5	22	75	15	62	41	16	7	34	1.76
4306--4342	19	1.9	19	89	10	58	64	0	5	29	1.15
4656--4744	31	2.9	31	91	3	126	49	3	16	30	1.62
7686--7710	7	3.6	7	100	0	50	40	0	28	32	1.57
8026--8074	25	2.0	25	91	0	80	34	16	32	16	1.91
10081--10151	2	37.5	2	73	10	60	47	4	1	46	1.30
10079--10177	50	1.9	51	85	6	137	49	5	1	44	1.31
11772--11930	31	5.4	30	76	13	118	17	21	27	33	1.96
11841--11888	22	2.3	20	83	13	62	18	14	25	41	1.88
11819--11921	53	1.9	53	88	0	152	17	19	26	36	1.94
16837--16896	31	1.9	31	93	0	102	30	16	3	50	1.62
17188--17317	22	5.9	22	77	2	118	43	10	13	33	1.77
17400--17540	44	3.2	43	84	6	158	41	9	14	35	1.77
17399--17930	22	24.8	22	66	14	141	37	9	16	36	1.82
17551--17620	37	1.9	35	83	11	88	38	4	20	37	1.72
17896--18047	62	2.5	62	91	2	243	41	9	14	34	1.78
18532--18557	6	4.3	6	100	0	52	50	34	0	15	1.45
18688--18827	22	6.3	22	76	8	113	32	7	19	40	1.79
19011--19265	22	11.6	23	73	12	137	42	9	14	33	1.79
19095--19262	44	3.8	44	76	4	162	41	10	13	34	1.78
19094--19240	66	2.2	66	80	2	161	40	10	14	34	1.79
19539--19642	23	4.6	23	81	3	104	38	9	14	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19346--19647	22	13.8	22	69	13	151	41	8	15	34	1.77
19742--19904	22	7.3	22	73	5	94	32	9	17	39	1.83
19968--20051	22	3.8	22	71	12	64	30	7	21	40	1.80
20124--20253	22	5.9	22	72	12	72	40	10	13	35	1.80
20172--20316	22	6.6	22	74	4	114	40	10	15	34	1.81
20550--20622	38	1.9	38	85	0	101	43	8	12	35	1.72
20589--20668	23	3.5	23	84	1	99	42	6	11	40	1.66
20466--20714	22	11.5	22	72	13	144	42	8	13	35	1.75
20422--20714	44	6.8	41	71	15	154	41	8	13	36	1.74
20422--20720	22	13.9	22	71	14	106	41	8	14	36	1.75
20732--20804	22	3.3	21	83	11	60	36	9	13	39	1.78
20751--20850	22	4.5	22	79	9	80	35	12	14	39	1.82
23665--23711	7	6.9	7	97	2	87	74	0	25	0	0.82
26530--26584	24	2.2	25	81	12	69	47	0	0	52	1.00

Tables:   1

The End!