Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013191.1 Corchorus capsularis cultivar CVL-1 contig13212, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36294

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105--209
33
3.2
32
81
8
113
23
8
20
46
1.78
239--343
33
3.2
33
91
0
165
30
10
15
43
1.80
853--896
21
2.1
21
86
0
61
29
20
20
29
1.98
1695--1726
12
2.7
12
90
0
55
6
21
43
28
1.77
7546--7633
32
2.7
33
80
3
97
39
17
10
32
1.83
7671--7779
33
3.3
33
82
5
157
42
21
11
24
1.86
7646--7786
66
2.1
66
96
0
228
41
19
10
27
1.85
13663--13727
30
2.2
30
83
5
78
10
27
40
21
1.87
14262--14373
33
3.4
33
87
0
152
22
41
24
12
1.88
17141--17225
33
2.6
33
86
1
118
48
14
8
29
1.72
17240--17309
33
2.1
33
89
0
113
48
21
7
22
1.74
24998--25106
33
3.3
33
90
0
173
43
18
10
28
1.82
24998--25139
66
2.2
66
81
2
160
41
19
9
29
1.83
25132--25236
33
3.2
33
83
2
140
46
20
9
23
1.79
28267--28345
33
2.4
33
86
0
104
21
36
31
10
1.87
29304--29337
8
4.1
8
85
7
50
58
14
2
23
1.50
31640--31716
33
2.3
32
82
6
91
22
42
25
9
1.82
32774--32870
33
2.9
33
84
3
115
8
28
39
23
1.84
34656--34762
33
3.4
31
79
8
117
42
15
10
30
1.81
34907--35029
33
3.7
33
80
8
124
22
39
28
8
1.84

Tables:   1

The End!