genome.fa.s13197.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013197.1 Corchorus capsularis cultivar CVL-1 contig13218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176959

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3847--3872	10	2.6	10	100	0	52	50	19	7	23	1.73
5192--5243	24	2.1	25	85	3	70	36	7	19	36	1.80
21689--21713	10	2.5	10	100	0	50	24	8	20	48	1.76
22659--22707	17	2.9	17	87	0	71	26	18	36	18	1.94
24985--25054	33	2.1	33	89	0	104	28	18	10	42	1.82
25124--25175	14	3.4	14	72	23	50	26	23	11	38	1.89
25110--25204	33	2.9	33	93	0	154	25	22	12	40	1.89
25137--25199	19	3.6	19	69	20	64	23	23	11	41	1.87
25492--25546	12	4.5	12	95	4	101	34	16	23	25	1.95
25492--25546	25	2.2	24	96	3	101	34	16	23	25	1.95
26973--26998	10	2.6	10	100	0	52	30	7	23	38	1.83
32969--32996	6	4.7	6	100	0	56	17	0	17	64	1.30
39522--39825	151	2.0	151	99	0	599	23	18	15	42	1.88
44246--44292	14	3.4	14	70	5	51	27	8	2	61	1.36
44122--44433	153	2.0	154	90	4	488	36	9	2	50	1.50
45443--45467	12	2.1	12	100	0	50	16	24	0	60	1.36
56864--56891	1	28.0	1	100	0	56	100	0	0	0	0.00
69057--69089	11	3.0	11	90	0	57	30	0	18	51	1.46
71537--71688	80	1.9	80	86	6	216	33	6	10	49	1.63
76644--76670	13	2.1	13	100	0	54	22	14	48	14	1.81
79126--79180	23	2.5	22	88	5	83	56	3	16	23	1.56
85041--85070	12	2.5	12	100	0	60	33	6	6	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93991--94016	10	2.6	10	100	0	52	50	19	7	23	1.73
94946--94972	6	4.5	6	100	0	54	29	0	14	55	1.40
101038--101063	10	2.6	10	100	0	52	50	19	7	23	1.73
101992--102018	6	4.5	6	100	0	54	29	0	14	55	1.40
115780--115884	41	2.6	40	88	5	142	30	20	8	40	1.82
119611--119653	2	21.0	2	85	4	59	44	0	6	48	1.29
123584--123670	36	2.4	36	86	0	111	29	20	12	36	1.90
123620--124277	61	10.9	61	86	2	889	24	24	13	37	1.91
123620--124306	181	3.8	180	88	2	1034	24	24	13	37	1.91
124008--124056	25	1.9	26	91	4	82	20	22	18	38	1.93
124920--124992	16	4.6	16	79	6	85	52	28	13	5	1.63
124919--124992	32	2.3	32	83	0	94	51	29	13	5	1.63
125147--125228	32	2.6	31	86	5	119	36	35	9	18	1.84
129788--130047	41	6.3	41	90	0	385	45	11	18	25	1.83
129788--130078	41	7.1	41	89	0	375	45	11	18	24	1.83
130145--130450	41	7.9	40	84	8	350	45	10	19	23	1.82
130261--130322	19	3.3	19	63	4	54	48	9	24	17	1.77
130145--130516	41	9.8	37	83	9	326	46	10	18	23	1.80
130145--130485	113	2.9	112	83	6	371	46	10	19	24	1.81
130437--130523	36	2.5	35	84	3	111	49	11	14	24	1.77
130456--130557	36	2.8	35	85	4	105	50	13	13	21	1.76
130579--130747	36	5.0	36	72	16	153	39	9	24	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134372--134398	2	13.5	2	100	0	54	51	0	0	48	1.00
142950--142977	13	2.2	13	100	0	56	64	7	0	28	1.20
144902--144950	11	4.5	11	80	14	57	81	0	18	0	0.69
144899--144950	22	2.4	21	84	6	68	82	0	17	0	0.66
144896--144950	7	7.7	7	79	18	60	81	0	18	0	0.68
147748--147774	2	13.5	2	100	0	54	51	0	0	48	1.00
157963--157993	16	1.9	16	100	0	62	19	3	0	77	0.90
168524--168560	11	3.2	12	85	11	51	72	5	13	8	1.24
170598--170643	7	6.6	7	82	7	58	0	17	0	82	0.67
170601--170676	17	4.2	18	74	11	66	0	15	3	80	0.86
170578--170643	20	3.2	20	77	22	66	4	19	0	75	0.97
170613--170658	20	2.5	20	82	10	53	0	23	0	76	0.79
174954--174998	21	2.1	21	84	8	56	42	8	24	24	1.83

Tables:   1

The End!