Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013202.1 Corchorus capsularis cultivar CVL-1 contig13223, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3220
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:1586 original size:6 final size:6

Alignment explanation


    Indices: 1577--1609  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       1567 AAAGCAAAAC

                                                  
       1577 AAATCT AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       1610 GCAGAATATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Found at i:1635 original size:13 final size:13

Alignment explanation


    Indices: 1617--1652  Score: 63
    Period size: 13  Copynumber: 2.8  Consensus size: 13

       1607 AAAGCAGAAT

                         
       1617 ATAAAGCAAATTA
          1 ATAAAGCAAATTA

                         
       1630 ATAAAGCAAATTA
          1 ATAAAGCAAATTA

                 *    
       1643 ATAAAACAAA
          1 ATAAAGCAAA

       1653 CAATAATTGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  13   22  1.00

ACGTcount: A:0.67, C:0.08, G:0.06, T:0.19


Consensus pattern (13 bp):   
ATAAAGCAAATTA
Done.