Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013209.1 Corchorus capsularis cultivar CVL-1 contig13230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22483
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:17202 original size:13 final size:14

Alignment explanation


    Indices: 17162--17200  Score: 69
    Period size: 14  Copynumber: 2.8  Consensus size: 14

      17152 CCTTGTAGGG

                          
      17162 TTTCTTGAAAAATC
          1 TTTCTTGAAAAATC

                          
      17176 TTTCTTGAAAAATC
          1 TTTCTTGAAAAATC

                  *    
      17190 TTTCTTTAAAA
          1 TTTCTTGAAAA

      17201 TCCAATGTAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  14   24  1.00

ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46


Consensus pattern (14 bp):   
TTTCTTGAAAAATC
Done.